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Conformers: ABBIImiBZICOPNSYNN
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RNA polymerase II elongation complex with unnatural base dTPT3

Results of the assignment of 39 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
017ked_R_A1_U2NANNANT00.52 AA08
027ked_R_U2_C3AAAAA00710.21 AA00
037ked_R_C3_G4AAAAA00860.16 AA00
047ked_R_G4_A5AAAAA00710.21 AA00
057ked_R_A5_G6AAwAA10740.17 AA10
067ked_R_G6_A7AAAAA08650.27 AA08
077ked_R_A7_G8NANNANT00.46 AA06
087ked_R_G8_G9AAAAA00690.28 AA00
097ked_R_G9_A10AAAAA03280.33 AA03
107ked_T_DC5_DG6BB2BB07220.62 BB07
117ked_T_DG6_DA7NANNANT00.62 BA10
127ked_T_DA7_DT8NANNANT00.54 AA10
137ked_T_DT8_DA9NANNANT00.64 AB03
147ked_T_DA9_DA10miBBB13710.41 BB13
157ked_T_DA10_DG11NANNANT00.81 BB13
167ked_T_DG11_DC12NANNANT00.82 BB17
177ked_T_DC12_DA13NANNANT00.55 BA16
187ked_T_DA13_DG14NANNANT00.59 AB02
197ked_T_DG14_DA15NANNANT00.59 BA10
207ked_T_DA15_DC16NANNANT00.55 AA01
217ked_T_DC16_DG17NANNANT00.89 IC03
227ked_T_DT19_DC20NANNANT00.57 AA01
237ked_T_DC20_DC21AAAAA03550.31 AA03
247ked_T_DC21_DT22NANNANT00.53 AA10
257ked_T_DT22_DC23NANNANT00.65 AA10
267ked_T_DC23_DT24NANNANT00.48 AA08
277ked_T_DT24_DC25NANNANT00.65 AB03
287ked_T_DC25_DG26NANNANT00.52 AA04
297ked_T_DG26_DA27AAwAA10810.21 AA10
307ked_T_DA27_DT28NANNANT00.57 IC03
317ked_N_DC1_DT2B-ABA10670.44 BA10
327ked_N_DT2_DG3NANNANT00.73 AB02
337ked_N_DG3_DC4NANNANT00.54 BB00
347ked_N_DC4_DT5NANNANT00.45 BB02
357ked_N_DT5_DT6BBwBB16580.43 BB16
367ked_N_DT6_DA7B12BB04250.30 BB04
377ked_N_DA7_DT8NANNANT00.65 BB08
387ked_N_DT8_DC9BBBBB00480.38 BB00
397ked_N_DC9_DG10NANNANT00.22 BB10

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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