DNATCO v4.1: results

Apo structure of the THF riboswitch aptamer domain

Results of the assignment of 90 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.

Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.

step number	Step name	CANA	NtC	confal	rmsd	NtCs
01	7kd1_A_G1_G2	AAA	AA00	54	0.23	AA00
02	7kd1_A_G2_A3	AAA	AA00	34	0.20	AA00
03	7kd1_A_A3_G4	AAw	AA01	20	0.19	AA01
04	7kd1_A_G4_A5	AAA	AA00	85	0.16	AA00
05	7kd1_A_A5_G6	AAA	AA00	51	0.39	AA00
06	7kd1_A_G6_U7	ICL	IC02	73	0.45	IC02
07	7kd1_A_U7_A8	NAN	NANT	0	0.48	BA08
08	7kd1_A_A8_G9	AAA	AA08	43	0.50	AA08
09	7kd1_A_G9_A10	AAA	AA00	37	0.20	AA00
10	7kd1_A_A10_U11	AAA	AA00	87	0.11	AA00
11	7kd1_A_U11_G12	AAA	AA00	89	0.13	AA00
12	7kd1_A_G12_A13	AAA	AA00	96	0.10	AA00
13	7kd1_A_A13_U14	AAA	AA08	75	0.21	AA08
14	7kd1_A_U14_U15	AAA	AA00	92	0.11	AA00
15	7kd1_A_U15_C16	AAA	AA00	73	0.20	AA00
16	7kd1_A_C16_G17	AAw	AA01	78	0.17	AA01
17	7kd1_A_G17_C18	AAA	AA00	73	0.24	AA00
18	7kd1_A_C18_G19	AAA	AA00	98	0.08	AA00
19	7kd1_A_G19_U20	AAA	AA00	79	0.25	AA00
20	7kd1_A_U20_U.A21	NAN	NANT	0	1.16	OP21
21	7kd1_A_U20_U.B21	NAN	NANT	0	1.71	OP21
22	7kd1_A_U.A21_A22	NAN	NANT	0	0.60	OP11
23	7kd1_A_U.B21_A22	NAN	NANT	0	1.81	BB14
24	7kd1_A_A22_A23	OPN	OP15	18	0.55	OP15
25	7kd1_A_A23_G24	AAA	AA00	35	0.41	AA00
26	7kd1_A_G24_U25	AAA	AA00	70	0.36	AA00
27	7kd1_A_U25_G26	AAA	AA00	54	0.39	AA00
28	7kd1_A_G26_U27	AAA	AA00	85	0.19	AA00
29	7kd1_A_U27_G28	AAA	AA00	93	0.11	AA00
30	7kd1_A_G28_U29	AAA	AA00	93	0.07	AA00
31	7kd1_A_U29_G30	AAA	AA00	73	0.13	AA00
32	7kd1_A_G30_U31	AAA	AA00	77	0.23	AA00
33	7kd1_A_U31_G32	AAA	AA00	73	0.22	AA00
34	7kd1_A_G32_A33	AAA	AA00	73	0.18	AA00
35	7kd1_A_A33_A34	AAw	AA01	56	0.27	AA01
36	7kd1_A_A34_U35	NAN	NANT	0	0.63	IC03
37	7kd1_A_U35_G36	NAN	NANT	0	1.15	IC07
38	7kd1_A_G36_G37	NAN	NANT	0	0.81	OP12
39	7kd1_A_G37_G38	AAA	AA00	27	0.34	AA00
40	7kd1_A_G38_A39	AAA	AA00	77	0.21	AA00
41	7kd1_A_A39_U40	AAA	AA00	88	0.12	AA00
42	7kd1_A_U40_G41	AAA	AA08	78	0.19	AA08
43	7kd1_A_G41_U42	A-B	AB05	37	0.41	AB05
44	7kd1_A_U42_C43	NAN	NANT	0	1.07	OP25
45	7kd1_A_C43_G44	NAN	NANT	0	1.57	AA07
46	7kd1_A_G44_U45	NAN	NANT	0	1.40	AA07
47	7kd1_A_U45_C46	NAN	NANT	0	0.47	AA10
48	7kd1_A_C46_A47	AAA	AA00	67	0.16	AA00
49	7kd1_A_A47_C48	AAA	AA08	79	0.22	AA08
50	7kd1_A_C48_A49	AAw	AA01	32	0.24	AA01
51	7kd1_A_A49_C50	AAA	AA08	83	0.14	AA08
52	7kd1_A_C50_A51	AAA	AA00	90	0.18	AA00
53	7kd1_A_A51_A52	AAA	AA08	69	0.34	AA08
54	7kd1_A_A52_C53	AAw	AA01	68	0.35	AA01
55	7kd1_A_C53_G54	AAA	AA08	69	0.36	AA08
56	7kd1_A_G54_A55	A-B	AB05	54	0.31	AB05
57	7kd1_A_A55_A56	NAN	NANT	0	0.47	OP14
58	7kd1_A_A56_G57	OPN	OP24	46	0.33	OP24
59	7kd1_A_G57_C58	AAA	AA00	90	0.13	AA00
60	7kd1_A_C58_G59	AAA	AA00	76	0.27	AA00
61	7kd1_A_G59_A60	OPN	OP03	93	0.05	OP03
62	7kd1_A_A60_G61	AAA	AA08	54	0.34	AA08
63	7kd1_A_G61_A62	AAA	AA00	25	0.30	AA00
64	7kd1_A_A62_G63	AAw	AA05	84	0.22	AA05
65	7kd1_A_G63_C64	AAA	AA08	89	0.14	AA08
66	7kd1_A_C64_G65	AAw	AA01	72	0.14	AA01
67	7kd1_A_G65_C66	AAA	AA08	65	0.27	AA08
68	7kd1_A_C66_G67	A-B	AB05	76	0.21	AB05
69	7kd1_A_G67_G68	NAN	NANT	0	0.42	OP17
70	7kd1_A_G68_U69	NAN	NANT	0	0.84	OP06
71	7kd1_A_U69_G70	AAu	AA12	76	0.30	AA12
72	7kd1_A_G70_A71	AAA	AA00	83	0.13	AA00
73	7kd1_A_A71_A72	AAA	AA00	92	0.14	AA00
74	7kd1_A_A72_U73	AAA	AA00	90	0.11	AA00
75	7kd1_A_U73_C74	AAA	AA00	96	0.11	AA00
76	7kd1_A_C74_A75	AAA	AA00	83	0.12	AA00
77	7kd1_A_A75_U76	AAA	AA08	83	0.23	AA08
78	7kd1_A_U76_U77	AAA	AA00	82	0.28	AA00
79	7kd1_A_U77_G78	AAA	AA00	79	0.26	AA00
80	7kd1_A_G78_C79	NAN	NANT	0	1.51	OP05
81	7kd1_A_C79_A80	AAA	AA00	53	0.29	AA00
82	7kd1_A_A80_U81	AAA	AA00	81	0.17	AA00
83	7kd1_A_U81_C82	AAA	AA08	79	0.22	AA08
84	7kd1_A_C82_C83	AAA	AA04	82	0.27	AA04
85	7kd1_A_C83_G84	AAA	AA08	68	0.26	AA08
86	7kd1_A_G84_C85	AAA	AA08	88	0.14	AA08
87	7kd1_A_C85_U86	AAA	AA03	76	0.26	AA03
88	7kd1_A_U86_C87	AAA	AA00	90	0.17	AA00
89	7kd1_A_C87_C88	AAA	AA00	26	0.41	AA00
90	7kd1_A_C88_A89	AAA	AA09	78	0.24	AA09

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

step:
Table of conformers

	δ1	ε1	ζ1	α2	β2	γ2	δ2	χ1	χ2	μ	NN	CC
step_torsions
ntC_average
Δ torsions
torsion scores

comments	step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA

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Results of the assignment of 90 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Restraints

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Definitions

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