DNATCO v4.1: results

Crystal structure of Bacillus halodurans OapB in complex with its OLE RNA target (crystal form II)

Results of the assignment of 118 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.

Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.

step number	Step name	CANA	NtC	confal	rmsd	NtCs
001	7k9e_B_GTP484_G485	AAA	AA08	50	0.23	AA08
002	7k9e_B_G485_C486	AAA	AA00	86	0.09	AA00
003	7k9e_B_C486_C487	AAA	AA00	96	0.13	AA00
004	7k9e_B_C487_A488	AAA	AA00	90	0.18	AA00
005	7k9e_B_A488_G489	AAw	AA01	91	0.15	AA01
006	7k9e_B_G489_U490	AAA	AA00	50	0.26	AA00
007	7k9e_B_U490_C491	A-B	AB05	82	0.28	AB05
008	7k9e_B_C491_U492	NAN	NANT	0	1.43	OP13
009	7k9e_B_U492_G493	AAA	AA00	66	0.19	AA00
010	7k9e_B_G493_G494	AAA	AA00	80	0.20	AA00
011	7k9e_B_G494_C495	AAA	AA08	78	0.32	AA08
012	7k9e_B_C495_G496	AAA	AA00	62	0.25	AA00
013	7k9e_B_G496_U497	AAA	AA00	69	0.24	AA00
014	7k9e_B_U497_U498	NAN	NANT	0	0.76	OP29
015	7k9e_B_U498_U499	NAN	NANT	0	0.98	OP13
016	7k9e_B_U499_G500	AAA	AA00	63	0.16	AA00
017	7k9e_B_G500_G501	AAA	AA00	87	0.23	AA00
018	7k9e_B_G501_U502	OPN	OP03	79	0.31	OP03
019	7k9e_B_U502_G503	AAA	AA08	48	0.43	AA08
020	7k9e_B_G503_A504	AAA	AA00	19	0.29	AA00
021	7k9e_B_A504_C505	AAw	AA05	22	0.44	AA05
022	7k9e_B_C505_A506	AAA	AA08	89	0.20	AA08
023	7k9e_B_A506_G507	AAA	AA00	87	0.20	AA00
024	7k9e_B_G507_C508	AAA	AA00	72	0.26	AA00
025	7k9e_B_C508_G509	AAA	AA04	83	0.27	AA04
026	7k9e_B_G509_C510	AAA	AA08	31	0.40	AA08
027	7k9e_B_C510_C511	AAA	AA00	79	0.20	AA00
028	7k9e_B_C511_A512	AAA	AA00	86	0.22	AA00
029	7k9e_B_A512_A513	AAA	AA00	86	0.11	AA00
030	7k9e_B_A513_G514	AAA	AA00	95	0.08	AA00
031	7k9e_B_G514_U515	AAA	AA08	83	0.17	AA08
032	7k9e_B_U515_U516	AAA	AA00	73	0.13	AA00
033	7k9e_B_U516_C517	AAw	AA01	93	0.14	AA01
034	7k9e_B_C517_U518	AAA	AA08	90	0.20	AA08
035	7k9e_B_U518_U519	OPN	OP09	64	0.27	OP09
036	7k9e_B_U519_C520	NAN	NANT	0	1.42	IC04
037	7k9e_B_C520_G521	NAN	NANT	0	0.69	ZZ1S
038	7k9e_B_G521_G522	NAN	NANT	0	0.74	AAS1
039	7k9e_B_G522_A523	AAw	AA01	65	0.28	AA01
040	7k9e_B_A523_A524	AAA	AA08	59	0.27	AA08
041	7k9e_B_A524_U525	AAw	AA01	36	0.29	AA01
042	7k9e_B_U525_U526	A-B	AB05	43	0.26	AB05
043	7k9e_B_U526_G527	NAN	NANT	0	1.31	OP13
044	7k9e_B_G527_G528	AAA	AA08	51	0.25	AA08
045	7k9e_B_G528_G529	AAA	AA00	59	0.31	AA00
046	7k9e_B_G529_A530	OPN	OP04	72	0.21	OP04
047	7k9e_B_A530_A531	AAA	AA08	55	0.26	AA08
048	7k9e_B_A531_A532	A-B	AB01	6	0.46	AB01
049	7k9e_B_A532_U533	NAN	NANT	0	0.99	OP09
050	7k9e_B_U533_C534	OPN	OP11	41	0.76	OP11
051	7k9e_B_C534_C535	AAA	AA00	93	0.16	AA00
052	7k9e_B_C535_U536	AAA	AA03	63	0.28	AA03
053	7k9e_B_U536_A537	AAA	AA00	75	0.26	AA00
054	7k9e_B_A537_C538	AAA	AA08	89	0.12	AA08
055	7k9e_B_C538_U539	AAA	AA00	80	0.21	AA00
056	7k9e_B_U539_G540	AAA	AA00	88	0.15	AA00
057	7k9e_B_G540_G541	AAA	AA00	85	0.12	AA00
058	7k9e_B_G541_C542	AAA	AA00	86	0.13	AA00
059	7k9e_B_C542_C543	AAA	AA00	92	0.18	AA00
060	7k9e_D_GTP484_G485	AAA	AA08	86	0.21	AA08
061	7k9e_D_G485_C486	AAA	AA00	78	0.13	AA00
062	7k9e_D_C486_C487	AAA	AA00	78	0.13	AA00
063	7k9e_D_C487_A488	AAA	AA00	97	0.15	AA00
064	7k9e_D_A488_G489	AAw	AA01	92	0.16	AA01
065	7k9e_D_G489_U490	AAA	AA00	63	0.24	AA00
066	7k9e_D_U490_C491	AAA	AA00	78	0.17	AA00
067	7k9e_D_C491_U492	NAN	NANT	0	1.74	OP09
068	7k9e_D_U492_G493	AAA	AA00	82	0.17	AA00
069	7k9e_D_G493_G494	AAA	AA00	83	0.19	AA00
070	7k9e_D_G494_C495	AAA	AA00	93	0.09	AA00
071	7k9e_D_C495_G496	AAA	AA00	93	0.13	AA00
072	7k9e_D_G496_U497	AAA	AA08	82	0.19	AA08
073	7k9e_D_U497_U498	NAN	NANT	0	1.44	OP29
074	7k9e_D_U498_U499	NAN	NANT	0	0.51	OP11
075	7k9e_D_U499_G500	AAA	AA00	70	0.20	AA00
076	7k9e_D_G500_G501	AAA	AA00	84	0.25	AA00
077	7k9e_D_G501_U502	OPN	OP03	75	0.35	OP03
078	7k9e_D_U502_G503	AAA	AA08	37	0.47	AA08
079	7k9e_D_G503_A504	AAA	AA02	70	0.24	AA02
080	7k9e_D_A504_C505	AAw	AA05	20	0.46	AA05
081	7k9e_D_C505_A506	AAA	AA00	73	0.27	AA00
082	7k9e_D_A506_G507	AAA	AA00	82	0.22	AA00
083	7k9e_D_G507_C508	AAA	AA00	80	0.23	AA00
084	7k9e_D_C508_G509	AAA	AA00	80	0.14	AA00
085	7k9e_D_G509_C510	AAA	AA00	78	0.12	AA00
086	7k9e_D_C510_C511	AAw	AA01	65	0.24	AA01
087	7k9e_D_C511_A512	AAA	AA08	96	0.16	AA08
088	7k9e_D_A512_A513	AAA	AA00	74	0.24	AA00
089	7k9e_D_A513_G514	AAA	AA00	72	0.23	AA00
090	7k9e_D_G514_U515	AAA	AA00	85	0.17	AA00
091	7k9e_D_U515_U516	AAA	AA00	81	0.11	AA00
092	7k9e_D_U516_C517	AAA	AA00	82	0.16	AA00
093	7k9e_D_C517_U518	AAA	AA00	84	0.27	AA00
094	7k9e_D_U518_U519	OPN	OP09	79	0.21	OP09
095	7k9e_D_U519_C520	OPN	OP20	65	0.48	OP20
096	7k9e_D_C520_G521	ZZZ	ZZ1S	38	0.26	ZZ1S
097	7k9e_D_G521_G522	NAN	NANT	0	0.83	AAS1
098	7k9e_D_G522_A523	AAA	AA00	79	0.11	AA00
099	7k9e_D_A523_A524	AAA	AA00	94	0.12	AA00
100	7k9e_D_A524_U525	AAA	AA00	72	0.26	AA00
101	7k9e_D_U525_U526	AAA	AA00	86	0.17	AA00
102	7k9e_D_U526_G527	NAN	NANT	0	0.56	OP29
103	7k9e_D_G527_G528	AAA	AA00	65	0.25	AA00
104	7k9e_D_G528_G529	AAA	AA00	52	0.45	AA00
105	7k9e_D_G529_A530	OPN	OP04	64	0.23	OP04
106	7k9e_D_A530_A531	AAA	AA08	63	0.34	AA08
107	7k9e_D_A531_A532	AAA	AA00	43	0.24	AA00
108	7k9e_D_A532_U533	OPN	OP09	52	0.52	OP09
109	7k9e_D_U533_C534	OPN	OP11	48	0.57	OP11
110	7k9e_D_C534_C535	AAA	AA00	56	0.27	AA00
111	7k9e_D_C535_U536	AAA	AA00	27	0.40	AA00
112	7k9e_D_U536_A537	AAA	AA00	76	0.24	AA00
113	7k9e_D_A537_C538	AAA	AA00	80	0.19	AA00
114	7k9e_D_C538_U539	AAA	AA00	76	0.23	AA00
115	7k9e_D_U539_G540	AAA	AA00	81	0.14	AA00
116	7k9e_D_G540_G541	AAA	AA00	80	0.15	AA00
117	7k9e_D_G541_C542	AAA	AA00	85	0.26	AA00
118	7k9e_D_C542_C543	AAA	AA00	84	0.26	AA00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

step:
Table of conformers

	δ1	ε1	ζ1	α2	β2	γ2	δ2	χ1	χ2	μ	NN	CC
step_torsions
ntC_average
Δ torsions
torsion scores

comments	step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA

Similarity of step to class averages

Browse conformers

Show

Color by conformation group (pyramids)

Color by NtC (balls)

A-B

B-A

B

IC

Z

N

Results of the assignment of 118 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

Download

Restraints

User-based restraints

Definitions

Download the papers

Browse conformers

Show

group
visible