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Conformers: ABBIImiBZICOPNSYNN
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Preaminoacylation complex of M. tuberculosis PheRS with cognate precursor tRNA and 5'-O-(N-phenylalanyl)sulfamoyl-adenosine (F-AMS)

Results of the assignment of 148 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
0017k98_C_G1_G2AAAAA00350.30 AA00
0027k98_C_G2_C3AAAAA00760.12 AA00
0037k98_C_C3_C4AAAAA00780.12 AA00
0047k98_C_C4_A5AAAAA08750.23 AA08
0057k98_C_A5_G6AAwAA01720.17 AA01
0067k98_C_G6_G7A-BAB05730.29 AB05
0077k98_C_G7_U8OPNOP11760.28 OP11
0087k98_C_U8_A9NANNANT00.89 IC02
0097k98_C_A9_G10NANNANT01.10 OP26
0107k98_C_G10_C11AAAAA08420.31 AA08
0117k98_C_C11_U12AAAAA00750.22 AA00
0127k98_C_U12_C13AAwAA01900.11 AA01
0137k98_C_C13_A14AAAAA00440.36 AA00
0147k98_C_A14_G15AAAAA08660.45 AA08
0157k98_C_G15_U16AAAAA08750.27 AA08
0167k98_C_U16_C17NANNANT00.98 OP29
0177k98_C_C17_G18NANNANT00.88 OP06
0187k98_C_G18_G19ICLIC05520.32 IC05
0197k98_C_G19_U20NANNANT01.61 OP20
0207k98_C_U20_A21NANNANT00.56 OP14
0217k98_C_G23_A24AAAAA00530.27 AA00
0227k98_C_A24_G25AAAAA00950.12 AA00
0237k98_C_G25_C26AAAAA08560.24 AA08
0247k98_C_C26_G27AAAAA00630.34 AA00
0257k98_C_G27_U28AAAAA00520.36 AA00
0267k98_C_U28_C29AAAAA00680.14 AA00
0277k98_C_C29_C30AAAAA00840.21 AA00
0287k98_C_C30_G31AAAAA00870.15 AA00
0297k98_C_G31_C32AAAAA08870.15 AA08
0307k98_C_C32_C33AAAAA08410.52 AA08
0317k98_C_C33_U34AAAAA00460.37 AA00
0327k98_C_U34_G35OPNOP04710.15 OP04
0337k98_C_G35_A36AAAAA00730.28 AA00
0347k98_C_A36_A37AAwAA10530.36 AA10
0357k98_C_A37_A38AAAAA08830.24 AA08
0367k98_C_A38_A39AAAAA00730.25 AA00
0377k98_C_A39_G40AAAAA00550.39 AA00
0387k98_C_G40_C41AAAAA00800.14 AA00
0397k98_C_C41_G42AAAAA00780.17 AA00
0407k98_C_G42_G43AAAAA00900.18 AA00
0417k98_C_G43_A44AAwAA01740.31 AA01
0427k98_C_A44_A45AAAAA08870.24 AA08
0437k98_C_A45_G46AAAAA08860.28 AA08
0447k98_C_G46_G47ICLIC01800.30 IC01
0457k98_C_G47_U48NANNANT00.27 OP17
0467k98_C_U48_C49NANNANT00.89 OP06
0477k98_C_C49_G50NANNANT01.31 OP05
0487k98_C_G50_G51AAAAA00690.22 AA00
0497k98_C_G51_C52AAAAA00910.10 AA00
0507k98_C_C52_G53AAwAA01710.29 AA01
0517k98_C_G53_G54AAAAA08840.27 AA08
0527k98_C_G54_U55AAAAA00850.18 AA00
0537k98_C_U55_U56AAAAA08790.31 AA08
0547k98_C_U56_C57OPNOP04780.19 OP04
0557k98_C_C57_G58AAwAA01400.30 AA01
0567k98_C_G58_A59ICLIC01680.44 IC01
0577k98_C_A59_U60OPNOP25510.45 OP25
0587k98_C_U60_C61A-BAB05850.31 AB05
0597k98_C_C61_C62OPNOP12810.21 OP12
0607k98_C_C62_C63AAAAA00670.24 AA00
0617k98_C_C63_G64AAAAA00960.10 AA00
0627k98_C_G64_C65AAAAA08860.19 AA08
0637k98_C_C65_C66AAAAA00730.29 AA00
0647k98_C_C66_C67AAAAA00810.18 AA00
0657k98_C_C67_C68AAAAA00790.18 AA00
0667k98_C_C68_U69AAAAA00830.20 AA00
0677k98_C_U69_G70AAAAA00840.11 AA00
0687k98_C_G70_G71AAAAA00940.14 AA00
0697k98_C_G71_C72AAAAA00820.12 AA00
0707k98_C_C72_C73AAwAA01850.15 AA01
0717k98_C_C73_A74AAAAA08740.31 AA08
0727k98_C_A74_C75AAAAA00880.21 AA00
0737k98_C_C75_C76AAAAA00790.23 AA00
0747k98_C_C76_A77NANNANT01.42 AA13
0757k98_F_G1_G2AAuAA12500.40 AA12
0767k98_F_G2_C3AAAAA00740.12 AA00
0777k98_F_C3_C4AAAAA00890.09 AA00
0787k98_F_C4_A5AAAAA08880.18 AA08
0797k98_F_A5_G6AAwAA06840.26 AA06
0807k98_F_G6_G7A-BAB05600.28 AB05
0817k98_F_G7_U8OPNOP11750.22 OP11
0827k98_F_U8_A9NANNANT00.93 IC02
0837k98_F_A9_G10NANNANT01.10 OP26
0847k98_F_G10_C11AAAAA08270.35 AA08
0857k98_F_C11_U12AAAAA00820.20 AA00
0867k98_F_U12_C13AAwAA01760.19 AA01
0877k98_F_C13_A14AAwAA01570.38 AA01
0887k98_F_A14_G15AAAAA08390.52 AA08
0897k98_F_G15_U16AAAAA00560.25 AA00
0907k98_F_U16_C17NANNANT01.32 OP29
0917k98_F_C17_G18NANNANT00.89 OP06
0927k98_F_G18_G19NANNANT00.40 IC05
0937k98_F_G19_U20NANNANT01.60 OP20
0947k98_F_U20_A21NANNANT00.58 OP14
0957k98_F_G23_A24AAAAA00490.26 AA00
0967k98_F_A24_G25AAAAA00880.19 AA00
0977k98_F_G25_C26AAAAA08670.23 AA08
0987k98_F_C26_G27AAAAA00490.36 AA00
0997k98_F_G27_U28AAAAA00600.33 AA00
1007k98_F_U28_C29AAAAA00740.20 AA00
1017k98_F_C29_C30AAAAA00890.17 AA00
1027k98_F_C30_G31AAAAA00890.13 AA00
1037k98_F_G31_C32AAAAA00930.12 AA00
1047k98_F_C32_C33AAAAA08450.47 AA08
1057k98_F_C33_U34AAAAA08660.26 AA08
1067k98_F_U34_G35OPNOP04900.12 OP04
1077k98_F_G35_A36AAAAA00790.30 AA00
1087k98_F_A36_A37AAwAA01580.29 AA01
1097k98_F_A37_A38AAAAA08850.26 AA08
1107k98_F_A38_A39AAAAA00790.24 AA00
1117k98_F_A39_G40AAAAA00490.37 AA00
1127k98_F_G40_C41AAAAA00900.16 AA00
1137k98_F_C41_G42AAAAA00780.21 AA00
1147k98_F_G42_G43AAAAA08790.20 AA08
1157k98_F_G43_A44AAwAA06590.28 AA06
1167k98_F_A44_A45AAAAA00500.27 AA00
1177k98_F_A45_G46AAAAA00640.33 AA00
1187k98_F_G46_G47ICLIC01310.32 IC01
1197k98_F_G47_U48NANNANT00.40 OP17
1207k98_F_U48_C49NANNANT00.93 OP06
1217k98_F_C49_G50NANNANT01.27 OP05
1227k98_F_G50_G51AAAAA00490.27 AA00
1237k98_F_G51_C52AAAAA00840.10 AA00
1247k98_F_C52_G53AAwAA01540.29 AA01
1257k98_F_G53_G54AAAAA08830.24 AA08
1267k98_F_G54_U55AAAAA00750.13 AA00
1277k98_F_U55_U56AAAAA08750.31 AA08
1287k98_F_U56_C57OPNOP04960.14 OP04
1297k98_F_C57_G58AAAAA08840.19 AA08
1307k98_F_G58_A59ICLIC01860.33 IC01
1317k98_F_A59_U60NANNANT00.46 OP25
1327k98_F_U60_C61A-BAB05780.32 AB05
1337k98_F_C61_C62OPNOP12940.12 OP12
1347k98_F_C62_C63AAAAA00460.29 AA00
1357k98_F_C63_G64AAAAA00930.10 AA00
1367k98_F_G64_C65AAAAA00920.10 AA00
1377k98_F_C65_C66AAAAA00370.26 AA00
1387k98_F_C66_C67AAAAA08830.19 AA08
1397k98_F_C67_C68AAAAA00780.18 AA00
1407k98_F_C68_U69AAAAA00800.21 AA00
1417k98_F_U69_G70AAAAA00930.10 AA00
1427k98_F_G70_G71AAAAA00880.14 AA00
1437k98_F_G71_C72AAAAA00720.13 AA00
1447k98_F_C72_C73AAwAA01930.17 AA01
1457k98_F_C73_A74AAAAA08850.33 AA08
1467k98_F_A74_C75AAAAA00840.20 AA00
1477k98_F_C75_C76AAAAA00780.23 AA00
1487k98_F_C76_A77NANNANT01.45 BB1S

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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