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Conformers: ABBIImiBZICOPNSYNN
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Human DNA polymerase beta ternary complex with templating cytosine and incoming deoxyguanosine diphosphate

Results of the assignment of 28 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
017k96_T_DC1_DC2BB2BB08710.24 BB08
027k96_T_DC2_DG3BBBBB00410.37 BB00
037k96_T_DG3_DA4BBwBB03490.46 BB03
047k96_T_DA4_DC5NANNANT00.33 BB03
057k96_T_DC5_DC6NANNANT01.22 OP21
067k96_T_DC6_DG7BBBBB00550.35 BB00
077k96_T_DG7_DC8BBBBB00740.28 BB00
087k96_T_DC8_DG9B12BB04360.41 BB04
097k96_T_DG9_DC10BBBBB01590.26 BB01
107k96_T_DC10_DA11BBBBB00770.27 BB00
117k96_T_DA11_DT12BBBBB00980.18 BB00
127k96_T_DT12_DC13B12BB04850.24 BB04
137k96_T_DC13_DA14BBBBB00720.34 BB00
147k96_T_DA14_DG15BBBBB00810.21 BB00
157k96_T_DG15_DC16B-ABA01770.25 BA01
167k96_P_DG1_DC2AAAAA00380.29 AA00
177k96_P_DC2_DT3NANNANT00.53 BB02
187k96_P_DT3_DG4BBBBB00210.47 BB00
197k96_P_DG4_DA5B-ABA08680.36 BA08
207k96_P_DA5_DT6BBBBB01520.21 BB01
217k96_P_DT6_DG7BBBBB01560.27 BB01
227k96_P_DG7_DC8BBBBB01690.21 BB01
237k96_P_DC8_DG9NANNANT00.30 BA05
247k96_P_DG9_DC10AAAAA00470.33 AA00
257k96_D_DG1_DT2BBBBB00770.23 BB00
267k96_D_DT2_DC3BBBBB00720.18 BB00
277k96_D_DC3_DG4BBBBB00730.22 BB00
287k96_D_DG4_DG5B12BB04880.15 BB04

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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