Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
Bst DNA polymerase I time-resolved structure, 48 hr post dATP and dCTP addition
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 22 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 7k5u_P_DC2_DG3 | NAN | NANT | 0 | 0.69 |
| 02 | 7k5u_P_DG3_DA4 | miB | BB15 | 53 | 0.51 |
| 03 | 7k5u_P_DA4_DT5 | BBB | BB00 | 75 | 0.35 |
| 04 | 7k5u_P_DT5_DC6 | BBB | BB00 | 51 | 0.21 |
| 05 | 7k5u_P_DC6_DA7 | BBw | BB02 | 61 | 0.31 |
| 06 | 7k5u_P_DA7_DC8 | B-A | BA05 | 55 | 0.32 |
| 07 | 7k5u_P_DC8_DG9 | A-B | AB03 | 36 | 0.30 |
| 08 | 7k5u_P_DG9_DT10 | B-A | BA08 | 81 | 0.28 |
| 09 | 7k5u_P_DT10_DA11 | AAA | AA00 | 58 | 0.28 |
| 10 | 7k5u_P_DA11_DC12 | A-B | AB05 | 65 | 0.16 |
| 11 | 7k5u_T_DC3_DG4 | NAN | NANT | 0 | 0.79 |
| 12 | 7k5u_T_DG4_DT5 | AAA | AA00 | 70 | 0.27 |
| 13 | 7k5u_T_DT5_DA6 | AAw | AA01 | 81 | 0.16 |
| 14 | 7k5u_T_DA6_DC7 | A-B | AB05 | 23 | 0.28 |
| 15 | 7k5u_T_DC7_DG8 | BBB | BB00 | 92 | 0.15 |
| 16 | 7k5u_T_DG8_DT9 | BBB | BB00 | 87 | 0.19 |
| 17 | 7k5u_T_DT9_DG10 | BBB | BB00 | 75 | 0.19 |
| 18 | 7k5u_T_DG10_DA11 | BBB | BB01 | 78 | 0.23 |
| 19 | 7k5u_T_DA11_DT12 | BBB | BB00 | 70 | 0.19 |
| 20 | 7k5u_T_DT12_DC13 | B-A | BA01 | 16 | 0.23 |
| 21 | 7k5u_T_DC13_DG14 | A-B | AB01 | 14 | 0.27 |
| 22 | 7k5u_T_DG14_DC15 | B-A | BA08 | 73 | 0.25 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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