Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
Bst DNA polymerase I time-resolved structure, 1 min post dATP addition
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 20 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 7k5o_P_DG1_DC2 | NAN | NANT | 0 | 0.54 |
| 02 | 7k5o_P_DC2_DG3 | BBB | BB00 | 26 | 0.29 |
| 03 | 7k5o_P_DG3_DA4 | BBB | BB00 | 28 | 0.14 |
| 04 | 7k5o_P_DA4_DT5 | BBB | BB00 | 59 | 0.28 |
| 05 | 7k5o_P_DT5_DC6 | BBB | BB01 | 74 | 0.16 |
| 06 | 7k5o_P_DC6_DA7 | BBB | BB00 | 51 | 0.16 |
| 07 | 7k5o_P_DA7_DC8 | B-A | BA08 | 82 | 0.26 |
| 08 | 7k5o_P_DC8_DG9 | AAA | AA00 | 53 | 0.30 |
| 09 | 7k5o_P_DG9_DT10 | A-B | AB01 | 66 | 0.20 |
| 10 | 7k5o_T_DT5_DA6 | NAN | NANT | 0 | 2.30 |
| 11 | 7k5o_T_DA6_DC7 | NAN | NANT | 0 | 0.47 |
| 12 | 7k5o_T_DC7_DG8 | AAw | AA01 | 78 | 0.20 |
| 13 | 7k5o_T_DG8_DT9 | NAN | NANT | 0 | 0.53 |
| 14 | 7k5o_T_DT9_DG10 | BBB | BB00 | 79 | 0.14 |
| 15 | 7k5o_T_DG10_DA11 | BBB | BB00 | 51 | 0.40 |
| 16 | 7k5o_T_DA11_DT12 | BBB | BB01 | 79 | 0.16 |
| 17 | 7k5o_T_DT12_DC13 | BBB | BB01 | 63 | 0.23 |
| 18 | 7k5o_T_DC13_DG14 | miB | BB15 | 67 | 0.32 |
| 19 | 7k5o_T_DG14_DC15 | BBB | BB01 | 14 | 0.39 |
| 20 | 7k5o_T_DC15_DA16 | BBB | BB01 | 42 | 0.27 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
Show
| Color by conformation group (pyramids) | |
|---|---|
| group | |||||||||
| visible |
| Color by NtC (balls) |
|---|
| A | ||||
|---|---|---|---|---|
| A-B | ||||
|---|---|---|---|---|
| B-A | ||||
|---|---|---|---|---|
| B | ||||
|---|---|---|---|---|
| IC | ||||
|---|---|---|---|---|
| OPN | ||||
|---|---|---|---|---|
| Z | ||||
|---|---|---|---|---|
| N | ||||
|---|---|---|---|---|