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Conformers: ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
Crystal structure of a lambda-186 hybrid repressor

Results of the assignment of 36 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
017jvt_E_DA2_DT3BBBBB00610.24 BB00
027jvt_E_DT3_DA4B12BB04610.27 BB04
037jvt_E_DA4_DC5B-ABA13830.21 BA13
047jvt_E_DC5_DC6AAAAA00860.32 AA00
057jvt_E_DC6_DA7NANNANT00.51 BB13
067jvt_E_DA7_DC8BBBBB01360.46 BB01
077jvt_E_DC8_DT9BBBBB00760.16 BB00
087jvt_E_DT9_DG10BB2BB07850.20 BB07
097jvt_E_DG10_DG11BBBBB00510.31 BB00
107jvt_E_DG11_DC12BB2BB07550.16 BB07
117jvt_E_DC12_DG13BBBBB00850.30 BB00
127jvt_E_DG13_DG14B-ABA09910.16 BA09
137jvt_E_DG14_DT15A-BAB05650.26 AB05
147jvt_E_DT15_DG16BBBBB00420.44 BB00
157jvt_E_DG16_DA17B-ABA08750.25 BA08
167jvt_E_DA17_DT18AAwAA01560.35 AA01
177jvt_E_DT18_DA19NANNANT00.65 AA11
187jvt_E_DA19_DT20NANNANT00.59 BB16
197jvt_F_DA22_DT23B-ABA08680.42 BA08
207jvt_F_DT23_DA24A-BAB03590.32 AB03
217jvt_F_DA24_DT25BBBBB00560.29 BB00
227jvt_F_DT25_DC26B-ABA01160.22 BA01
237jvt_F_DC26_DA27NANNANT00.68 BB02
247jvt_F_DA27_DC28BBBBB01470.46 BB01
257jvt_F_DC28_DC29BBBBB00590.20 BB00
267jvt_F_DC29_DG30BB2BB07600.35 BB07
277jvt_F_DG30_DC31NANNANT00.52 BB10
287jvt_F_DC31_DC32NANNANT00.61 BA17
297jvt_F_DC32_DA33NANNANT00.36 BA08
307jvt_F_DA33_DG34AAwAA01320.33 AA01
317jvt_F_DG34_DT35AAAAA00950.16 AA00
327jvt_F_DT35_DG36A-BAB05770.26 AB05
337jvt_F_DG36_DG37BBBBB00610.29 BB00
347jvt_F_DG37_DT38BBBBB00800.20 BB00
357jvt_F_DT38_DA39B12BB04820.25 BB04
367jvt_F_DA39_DT40NANNANT00.51 BB05

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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