Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
MtrR bound to the mtrCDE operator from Neisseria gonorrhoeae
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 40 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 7ju3_C_DT1_DA2 | B12 | BB04 | 51 | 0.28 |
| 02 | 7ju3_C_DA2_DT3 | BBB | BB00 | 28 | 0.29 |
| 03 | 7ju3_C_DT3_DC4 | BBB | BB00 | 52 | 0.28 |
| 04 | 7ju3_C_DC4_DC5 | BBB | BB00 | 83 | 0.17 |
| 05 | 7ju3_C_DC5_DG6 | B12 | BB04 | 54 | 0.18 |
| 06 | 7ju3_C_DG6_DT7 | BBw | BB02 | 10 | 0.32 |
| 07 | 7ju3_C_DT7_DG8 | BBB | BB00 | 60 | 0.26 |
| 08 | 7ju3_C_DG8_DC9 | BBB | BB00 | 82 | 0.23 |
| 09 | 7ju3_C_DC9_DA10 | B12 | BB04 | 76 | 0.21 |
| 10 | 7ju3_C_DA10_DA11 | miB | BB15 | 30 | 0.28 |
| 11 | 7ju3_C_DA11_DT12 | B12 | BB04 | 10 | 0.26 |
| 12 | 7ju3_C_DT12_DC13 | BBB | BB01 | 63 | 0.17 |
| 13 | 7ju3_C_DC13_DG14 | BBB | BB01 | 69 | 0.21 |
| 14 | 7ju3_C_DG14_DT15 | BBB | BB01 | 60 | 0.23 |
| 15 | 7ju3_C_DT15_DG16 | BBB | BB00 | 59 | 0.17 |
| 16 | 7ju3_C_DG16_DT17 | BBB | BB00 | 93 | 0.12 |
| 17 | 7ju3_C_DT17_DA18 | B12 | BB04 | 73 | 0.15 |
| 18 | 7ju3_C_DA18_DT19 | BBB | BB00 | 67 | 0.20 |
| 19 | 7ju3_C_DT19_DG20 | BBB | BB01 | 63 | 0.25 |
| 20 | 7ju3_C_DG20_DT21 | NAN | NANT | 0 | 0.33 |
| 21 | 7ju3_D_DA1_DC2 | B-A | BA05 | 65 | 0.29 |
| 22 | 7ju3_D_DC2_DA3 | A-B | AB01 | 17 | 0.29 |
| 23 | 7ju3_D_DA3_DT4 | BBB | BB01 | 91 | 0.15 |
| 24 | 7ju3_D_DT4_DA5 | BBB | BB00 | 67 | 0.16 |
| 25 | 7ju3_D_DA5_DC6 | BBB | BB00 | 80 | 0.18 |
| 26 | 7ju3_D_DC6_DA7 | miB | BB10 | 89 | 0.18 |
| 27 | 7ju3_D_DA7_DC8 | B-A | BA01 | 13 | 0.18 |
| 28 | 7ju3_D_DC8_DG9 | A-B | AB01 | 75 | 0.29 |
| 29 | 7ju3_D_DG9_DA10 | BBB | BB00 | 83 | 0.10 |
| 30 | 7ju3_D_DA10_DT11 | BBw | BB02 | 53 | 0.22 |
| 31 | 7ju3_D_DT11_DT12 | BBB | BB01 | 59 | 0.25 |
| 32 | 7ju3_D_DT12_DG13 | BBB | BB00 | 24 | 0.27 |
| 33 | 7ju3_D_DG13_DC14 | BBB | BB01 | 37 | 0.27 |
| 34 | 7ju3_D_DC14_DA15 | B-A | BA01 | 16 | 0.42 |
| 35 | 7ju3_D_DA15_DC16 | AAw | AA10 | 33 | 0.47 |
| 36 | 7ju3_D_DC16_DG17 | NAN | NANT | 0 | 0.42 |
| 37 | 7ju3_D_DG17_DG18 | BBB | BB01 | 28 | 0.28 |
| 38 | 7ju3_D_DG18_DA19 | B-A | BA01 | 13 | 0.16 |
| 39 | 7ju3_D_DA19_DT20 | BBB | BB01 | 44 | 0.26 |
| 40 | 7ju3_D_DT20_DA21 | miB | BB10 | 68 | 0.29 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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