Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
MtrR bound to the rpoH operator from Neisseria gonorrhoeae
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 40 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 7jnp_C_DT1_DT2 | A-B | AB01 | 36 | 0.36 |
| 02 | 7jnp_C_DT2_DA3 | BBB | BB00 | 59 | 0.44 |
| 03 | 7jnp_C_DA3_DC4 | B-A | BA09 | 64 | 0.24 |
| 04 | 7jnp_C_DC4_DA5 | A-B | AB05 | 61 | 0.23 |
| 05 | 7jnp_C_DA5_DT6 | BBB | BB00 | 82 | 0.16 |
| 06 | 7jnp_C_DT6_DA7 | BBB | BB00 | 49 | 0.21 |
| 07 | 7jnp_C_DA7_DC8 | BBB | BB00 | 66 | 0.18 |
| 08 | 7jnp_C_DC8_DA9 | BBB | BB00 | 71 | 0.20 |
| 09 | 7jnp_C_DA9_DA10 | B-A | BA01 | 39 | 0.14 |
| 10 | 7jnp_C_DA10_DC11 | A-B | AB03 | 83 | 0.30 |
| 11 | 7jnp_C_DC11_DC12 | NAN | NANT | 0 | 0.44 |
| 12 | 7jnp_C_DC12_DA13 | B-A | BA05 | 11 | 0.36 |
| 13 | 7jnp_C_DA13_DC14 | B-A | BA05 | 54 | 0.34 |
| 14 | 7jnp_C_DC14_DG15 | A-B | AB03 | 77 | 0.20 |
| 15 | 7jnp_C_DG15_DT16 | BBB | BB00 | 74 | 0.18 |
| 16 | 7jnp_C_DT16_DA17 | B12 | BB04 | 20 | 0.21 |
| 17 | 7jnp_C_DA17_DT18 | BBB | BB00 | 76 | 0.20 |
| 18 | 7jnp_C_DT18_DG19 | B12 | BB04 | 64 | 0.21 |
| 19 | 7jnp_C_DG19_DT20 | miB | BB15 | 64 | 0.26 |
| 20 | 7jnp_C_DT20_DA21 | NAN | NANT | 0 | 0.38 |
| 21 | 7jnp_D_DT1_DA2 | BBw | BB16 | 82 | 0.29 |
| 22 | 7jnp_D_DA2_DC3 | B-A | BA09 | 70 | 0.21 |
| 23 | 7jnp_D_DC3_DA4 | A-B | AB05 | 56 | 0.19 |
| 24 | 7jnp_D_DA4_DT5 | BBB | BB01 | 91 | 0.13 |
| 25 | 7jnp_D_DT5_DA6 | BBB | BB00 | 74 | 0.16 |
| 26 | 7jnp_D_DA6_DC7 | BBB | BB00 | 46 | 0.21 |
| 27 | 7jnp_D_DC7_DG8 | BBB | BB00 | 75 | 0.19 |
| 28 | 7jnp_D_DG8_DT9 | B-A | BA08 | 51 | 0.49 |
| 29 | 7jnp_D_DT9_DG10 | A-B | AB01 | 32 | 0.27 |
| 30 | 7jnp_D_DG10_DG11 | miB | BB10 | 88 | 0.30 |
| 31 | 7jnp_D_DG11_DT12 | BBB | BB01 | 30 | 0.24 |
| 32 | 7jnp_D_DT12_DT13 | B-A | BA05 | 59 | 0.35 |
| 33 | 7jnp_D_DT13_DG14 | BBB | BB00 | 28 | 0.23 |
| 34 | 7jnp_D_DG14_DT15 | BBB | BB00 | 33 | 0.19 |
| 35 | 7jnp_D_DT15_DA16 | B12 | BB04 | 18 | 0.23 |
| 36 | 7jnp_D_DA16_DT17 | BBB | BB00 | 66 | 0.18 |
| 37 | 7jnp_D_DT17_DG18 | BBB | BB00 | 74 | 0.21 |
| 38 | 7jnp_D_DG18_DT19 | miB | BB15 | 68 | 0.24 |
| 39 | 7jnp_D_DT19_DA20 | B12 | BB04 | 53 | 0.28 |
| 40 | 7jnp_D_DA20_DA21 | miB | BB13 | 84 | 0.26 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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