DNATCO v4.1: results

Crystal structure of a double-ENE RNA stability element in complex with a 28-mer poly(A) RNA

Results of the assignment of 106 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.

Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.

step number	Step name	CANA	NtC	confal	rmsd	NtCs
001	7jnh_A_A1_A2	NAN	NANT	0	0.88	AA04
002	7jnh_A_A2_A3	NAN	NANT	0	0.38	OP06
003	7jnh_A_A3_A4	AAw	AA06	60	0.30	AA06
004	7jnh_A_A4_A5	NAN	NANT	0	0.65	AA10
005	7jnh_A_A5_A6	NAN	NANT	0	0.69	AA10
006	7jnh_A_A6_A7	NAN	NANT	0	0.71	IC06
007	7jnh_A_A7_A8	B-A	BA16	16	0.50	BA16
008	7jnh_A_A8_A9	AAA	AA00	30	0.42	AA00
009	7jnh_A_A9_A10	NAN	NANT	0	0.80	BB13
010	7jnh_A_A10_A11	NAN	NANT	0	0.57	BA10
011	7jnh_A_A11_A12	AAA	AA04	54	0.33	AA04
012	7jnh_A_A12_A13	AAw	AA01	23	0.36	AA01
013	7jnh_A_A13_A14	AAw	AA01	39	0.21	AA01
014	7jnh_A_A14_A15	NAN	NANT	0	0.69	IC02
015	7jnh_A_A21_A22	NAN	NANT	0	0.62	OP11
016	7jnh_A_A22_A23	AAA	AA08	69	0.24	AA08
017	7jnh_A_A23_A24	NAN	NANT	0	0.77	OP08
018	7jnh_A_A24_A25	NAN	NANT	0	0.54	BA10
019	7jnh_A_A25_A26	AAw	AA06	62	0.32	AA06
020	7jnh_A_A26_A27	AAw	AA10	9	0.33	AA10
021	7jnh_A_A27_A28	NAN	NANT	0	0.41	AA01
022	7jnh_B_G1_G2	AAA	AA08	87	0.24	AA08
023	7jnh_B_G2_G3	AAw	AA01	37	0.39	AA01
024	7jnh_B_G3_C4	NAN	NANT	0	0.76	AB02
025	7jnh_B_C4_U5	AAA	AA08	57	0.21	AA08
026	7jnh_B_U5_G6	AAA	AA00	82	0.21	AA00
027	7jnh_B_G6_A7	AAA	AA00	88	0.09	AA00
028	7jnh_B_A7_G8	AAA	AA00	83	0.19	AA00
029	7jnh_B_G8_U9	NAN	NANT	0	0.96	AA11
030	7jnh_B_U9_U10	AAA	AA08	91	0.18	AA08
031	7jnh_B_U10_U11	AAA	AA04	78	0.29	AA04
032	7jnh_B_U11_U12	AAA	AA08	73	0.24	AA08
033	7jnh_B_U12_U13	AAw	AA06	66	0.28	AA06
034	7jnh_B_U13_A14	NAN	NANT	0	0.81	AA11
035	7jnh_B_A14_C15	AAA	AA00	17	0.42	AA00
036	7jnh_B_C15_A16	AAA	AA08	53	0.25	AA08
037	7jnh_B_A16_U17	AAA	AA00	71	0.19	AA00
038	7jnh_B_U17_G18	AAA	AA04	89	0.21	AA04
039	7jnh_B_G18_A19	AAA	AA08	83	0.21	AA08
040	7jnh_B_A19_C20	AAA	AA00	84	0.18	AA00
041	7jnh_B_C20_A21	AAA	AA08	75	0.29	AA08
042	7jnh_B_A21_A22	AAA	AA00	94	0.14	AA00
043	7jnh_B_A22_A23	AAA	AA00	76	0.15	AA00
044	7jnh_B_A23_G24	AAA	AA00	72	0.21	AA00
045	7jnh_B_G24_U25	NAN	NANT	0	1.08	AA01
046	7jnh_B_U25_U26	NAN	NANT	0	0.42	AA03
047	7jnh_B_U26_U27	NAN	NANT	0	0.31	AA10
048	7jnh_B_U27_U28	NAN	NANT	0	0.81	AA11
049	7jnh_B_U28_U29	AAw	AA06	21	0.58	AA06
050	7jnh_B_U29_A30	AAA	AA08	13	0.56	AA08
051	7jnh_B_A30_A31	NAN	NANT	0	0.60	IC03
052	7jnh_B_A31_C32	NAN	NANT	0	0.65	OP21
053	7jnh_B_C32_G33	NAN	NANT	0	1.61	OP14
054	7jnh_B_G33_A34	AAA	AA04	69	0.23	AA04
055	7jnh_B_A34_G35	AAA	AA00	58	0.17	AA00
056	7jnh_B_G35_G36	AAA	AA08	67	0.30	AA08
057	7jnh_B_G36_C37	AAA	AA08	50	0.22	AA08
058	7jnh_B_C37_A38	AAA	AA00	72	0.22	AA00
059	7jnh_B_A38_G39	AAA	AA04	63	0.25	AA04
060	7jnh_B_G39_C40	AAA	AA08	80	0.22	AA08
061	7jnh_B_C40_G41	AAA	AA04	87	0.12	AA04
062	7jnh_B_G41_G42	AAA	AA08	64	0.25	AA08
063	7jnh_B_G42_C43	AAA	AA08	64	0.21	AA08
064	7jnh_B_C43_G44	AAw	AA01	47	0.38	AA01
065	7jnh_B_G44_A45	NAN	NANT	0	0.50	OP04
066	7jnh_B_A45_A46	AAA	AA00	54	0.30	AA00
067	7jnh_B_A46_A47	AAA	AA00	38	0.31	AA00
068	7jnh_B_A47_G48	AAw	AA05	56	0.37	AA05
069	7jnh_B_G48_U49	AAA	AA08	73	0.29	AA08
070	7jnh_B_U49_C50	AAA	AA08	80	0.36	AA08
071	7jnh_B_C50_G51	AAA	AA00	78	0.17	AA00
072	7jnh_B_G51_C52	AAA	AA08	76	0.20	AA08
073	7jnh_B_C52_U53	AAw	AA10	56	0.26	AA10
074	7jnh_B_U53_G54	NAN	NANT	0	0.38	AA08
075	7jnh_B_G54_U55	AAA	AA08	53	0.25	AA08
076	7jnh_B_U55_A56	ICL	IC04	26	0.47	IC04
077	7jnh_B_A56_C57	NAN	NANT	0	0.52	OP26
078	7jnh_B_C57_U58	AAA	AA00	29	0.30	AA00
079	7jnh_B_U58_C59	AAw	AA01	85	0.22	AA01
080	7jnh_B_C59_U60	AAA	AA08	68	0.26	AA08
081	7jnh_B_U60_U61	AAA	AA08	75	0.14	AA08
082	7jnh_B_U61_U62	AAA	AA00	74	0.22	AA00
083	7jnh_B_U62_U63	AAA	AA00	73	0.21	AA00
084	7jnh_B_U63_C64	AAA	AA08	36	0.57	AA08
085	7jnh_B_C64_U65	AAA	AA00	54	0.15	AA00
086	7jnh_B_U65_U66	AAA	AA00	76	0.20	AA00
087	7jnh_B_U66_U67	AAA	AA00	69	0.22	AA00
088	7jnh_B_U67_G68	AAw	AA06	48	0.34	AA06
089	7jnh_B_G68_U69	AAA	AA00	15	0.40	AA00
090	7jnh_B_U69_C70	AAA	AA08	46	0.29	AA08
091	7jnh_B_C70_A71	AAA	AA08	61	0.22	AA08
092	7jnh_B_A71_U72	AAA	AA08	80	0.15	AA08
093	7jnh_B_U72_G73	AAA	AA00	70	0.26	AA00
094	7jnh_B_G73_G74	AAA	AA08	52	0.55	AA08
095	7jnh_B_G74_U75	AAA	AA04	76	0.36	AA04
096	7jnh_B_U75_U76	AAA	AA08	72	0.22	AA08
097	7jnh_B_U76_U77	AAA	AA00	61	0.27	AA00
098	7jnh_B_U77_U78	AAA	AA04	85	0.16	AA04
099	7jnh_B_U78_C79	AAA	AA08	19	0.72	AA08
100	7jnh_B_C79_U80	AAA	AA00	56	0.24	AA00
101	7jnh_B_U80_C81	AAA	AA00	50	0.28	AA00
102	7jnh_B_C81_A82	AAA	AA00	67	0.17	AA00
103	7jnh_B_A82_G83	AAA	AA00	73	0.16	AA00
104	7jnh_B_G83_C84	NAN	NANT	0	0.35	AA10
105	7jnh_B_C84_C85	AAA	AA08	53	0.26	AA08
106	7jnh_B_C85_CCC86	A-B	AB05	46	0.23	AB05

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

step:
Table of conformers

	δ1	ε1	ζ1	α2	β2	γ2	δ2	χ1	χ2	μ	NN	CC
step_torsions
ntC_average
Δ torsions
torsion scores

comments	step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA

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Results of the assignment of 106 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Definitions

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