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Conformers: ABBIImiBZICOPNSYNN
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IRF Transcription Factor

Results of the assignment of 72 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
017jm4_D_DC1_DA2NANNANT00.90 BB20
027jm4_D_DA2_DA3BBBBB00660.19 BB00
037jm4_D_DA3_DC4B-ABA05720.23 BA05
047jm4_D_DC4_DT5AAAAA00470.45 AA00
057jm4_D_DT5_DG6A-BAB03630.47 AB03
067jm4_D_DG6_DA7BBBBB00650.26 BB00
077jm4_D_DA7_DA8BBBBB00890.22 BB00
087jm4_D_DA8_DA9BBBBB00720.19 BB00
097jm4_D_DA9_DC10B-ABA05810.19 BA05
107jm4_D_DC10_DC11AAAAA00370.41 AA00
117jm4_D_DC11_DG12A-BAB01700.14 AB01
127jm4_D_DG12_DA13BBBBB00250.20 BB00
137jm4_D_DA13_DG14B12BB04820.14 BB04
147jm4_D_DG14_DA15BBBBB00760.26 BB00
157jm4_D_DA15_DA16BBBBB01310.23 BB01
167jm4_D_DA16_DA17B-ABA05590.40 BA05
177jm4_D_DA17_DG18B-ABA05240.37 BA05
187jm4_D_DG18_DC19A-BAB03950.21 AB03
197jm4_E_DG1_DC2NANNANT00.82 AA03
207jm4_E_DC2_DT3B-ABA0570.65 BA05
217jm4_E_DT3_DT4NANNANT00.52 AA04
227jm4_E_DT4_DT5A-BAB03330.38 AB03
237jm4_E_DT5_DC6BBBBB00660.22 BB00
247jm4_E_DC6_DT7BBBBB01880.11 BB01
257jm4_E_DT7_DC8BBBBB01620.19 BB01
267jm4_E_DC8_DG9A-BAB03730.22 AB03
277jm4_E_DG9_DG10miBBB12880.24 BB12
287jm4_E_DG10_DT11BBwBB16480.67 BB16
297jm4_E_DT11_DT12BBBBB01820.12 BB01
307jm4_E_DT12_DT13BBBBB01310.31 BB01
317jm4_E_DT13_DC14BBBBB00910.15 BB00
327jm4_E_DC14_DA15BBBBB00780.32 BB00
337jm4_E_DA15_DG16B-ABA09800.34 BA09
347jm4_E_DG16_DT17NANNANT00.34 AB04
357jm4_E_DT17_DT18BBBBB00730.22 BB00
367jm4_E_DT18_DG19NANNANT00.50 ZZ2S
377jm4_C_DC1_DA2A-BAB01320.28 AB01
387jm4_C_DA2_DA3BBBBB01790.22 BB01
397jm4_C_DA3_DC4B-ABA05770.22 BA05
407jm4_C_DC4_DT5AAAAA00470.45 AA00
417jm4_C_DT5_DG6A-BAB03580.49 AB03
427jm4_C_DG6_DA7BBBBB00670.24 BB00
437jm4_C_DA7_DA8BBBBB00890.24 BB00
447jm4_C_DA8_DA9BBBBB00700.17 BB00
457jm4_C_DA9_DC10B-ABA05790.18 BA05
467jm4_C_DC10_DC11AAAAA00390.40 AA00
477jm4_C_DC11_DG12A-BAB01680.15 AB01
487jm4_C_DG12_DA13BBBBB00260.21 BB00
497jm4_C_DA13_DG14B12BB04790.18 BB04
507jm4_C_DG14_DA15BBBBB00780.27 BB00
517jm4_C_DA15_DA16BBBBB01310.22 BB01
527jm4_C_DA16_DA17BBBBB01560.27 BB01
537jm4_C_DA17_DG18B-ABA05140.39 BA05
547jm4_C_DG18_DC19A-BAB03940.24 AB03
557jm4_F_DG1_DC2NANNANT00.83 AA03
567jm4_F_DC2_DT3BBBBB00370.45 BB00
577jm4_F_DT3_DT4NANNANT00.38 BB13
587jm4_F_DT4_DT5A-BAB03380.34 AB03
597jm4_F_DT5_DC6BBBBB00360.23 BB00
607jm4_F_DC6_DT7BBBBB01900.12 BB01
617jm4_F_DT7_DC8BBBBB01820.14 BB01
627jm4_F_DC8_DG9BBBBB00180.29 BB00
637jm4_F_DG9_DG10miBBB12680.28 BB12
647jm4_F_DG10_DT11BBwBB16500.66 BB16
657jm4_F_DT11_DT12BBBBB00700.17 BB00
667jm4_F_DT12_DT13BBBBB00610.32 BB00
677jm4_F_DT13_DC14BBBBB00840.21 BB00
687jm4_F_DC14_DA15BBBBB00770.34 BB00
697jm4_F_DA15_DG16B-ABA09710.16 BA09
707jm4_F_DG16_DT17A-BAB05600.27 AB05
717jm4_F_DT17_DT18BBBBB01480.18 BB01
727jm4_F_DT18_DG19BBBBB00650.23 BB00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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