Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
Structure of Centromeric Satellite III Non-canonical Duplex
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 24 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 7jlh_A_DA1_DA2 | NAN | NANT | 0 | 0.46 |
| 02 | 7jlh_A_DA2_DT3 | BBB | BB00 | 66 | 0.27 |
| 03 | 7jlh_A_DT3_DG4 | NAN | NANT | 0 | 0.64 |
| 04 | 7jlh_A_DG4_DG5 | B-A | BA08 | 48 | 0.31 |
| 05 | 7jlh_B_DA1_DA2 | BBB | BB00 | 14 | 0.49 |
| 06 | 7jlh_B_DA2_DT3 | BBB | BB00 | 74 | 0.35 |
| 07 | 7jlh_B_DT3_DG4 | NAN | NANT | 0 | 0.54 |
| 08 | 7jlh_B_DG4_DG5 | B-A | BA08 | 75 | 0.30 |
| 09 | 7jlh_C_DA1_DA2 | B-A | BA05 | 17 | 0.44 |
| 10 | 7jlh_C_DA2_DT3 | BBB | BB01 | 60 | 0.30 |
| 11 | 7jlh_C_DT3_DG4 | NAN | NANT | 0 | 0.76 |
| 12 | 7jlh_C_DG4_DG5 | B-A | BA01 | 23 | 0.32 |
| 13 | 7jlh_D_DA1_DA2 | BBB | BB00 | 24 | 0.40 |
| 14 | 7jlh_D_DA2_DT3 | BBB | BB00 | 75 | 0.22 |
| 15 | 7jlh_D_DT3_DG4 | NAN | NANT | 0 | 0.49 |
| 16 | 7jlh_D_DG4_DG5 | BB2 | BB07 | 77 | 0.21 |
| 17 | 7jlh_E_DA1_DA2 | B-A | BA01 | 8 | 0.53 |
| 18 | 7jlh_E_DA2_DT3 | NAN | NANT | 0 | 0.41 |
| 19 | 7jlh_E_DT3_DG4 | NAN | NANT | 0 | 0.61 |
| 20 | 7jlh_E_DG4_DG5 | B-A | BA13 | 40 | 0.42 |
| 21 | 7jlh_F_DA1_DA2 | NAN | NANT | 0 | 0.56 |
| 22 | 7jlh_F_DA2_DT3 | BBB | BB00 | 10 | 0.34 |
| 23 | 7jlh_F_DT3_DG4 | NAN | NANT | 0 | 0.62 |
| 24 | 7jlh_F_DG4_DG5 | B-A | BA17 | 71 | 0.27 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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