Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
complex structure of EnrR-DNA
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 42 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 7f9h_C_DC1_DG2 | A-B | AB05 | 82 | 0.22 |
| 02 | 7f9h_C_DG2_DA3 | BBB | BB00 | 93 | 0.19 |
| 03 | 7f9h_C_DA3_DA4 | BBB | BB01 | 92 | 0.17 |
| 04 | 7f9h_C_DA4_DA5 | BBB | BB01 | 87 | 0.17 |
| 05 | 7f9h_C_DA5_DT6 | BBB | BB01 | 96 | 0.15 |
| 06 | 7f9h_C_DT6_DA7 | BBB | BB00 | 75 | 0.21 |
| 07 | 7f9h_C_DA7_DT8 | B-A | BA05 | 67 | 0.13 |
| 08 | 7f9h_C_DT8_CBR9 | A-B | AB01 | 25 | 0.39 |
| 09 | 7f9h_C_CBR9_DT10 | B-A | BA01 | 29 | 0.25 |
| 10 | 7f9h_C_DT10_DA11 | NAN | NANT | 0 | 0.54 |
| 11 | 7f9h_C_DA11_DT12 | NAN | NANT | 0 | 0.81 |
| 12 | 7f9h_C_DT12_DA13 | A-B | AB01 | 83 | 0.40 |
| 13 | 7f9h_C_DA13_DG14 | BB2 | BB07 | 39 | 0.48 |
| 14 | 7f9h_C_DG14_DA15 | BBB | BB00 | 88 | 0.15 |
| 15 | 7f9h_C_DA15_DT16 | BBB | BB01 | 87 | 0.14 |
| 16 | 7f9h_C_DT16_DA17 | BBB | BB01 | 83 | 0.15 |
| 17 | 7f9h_C_DA17_DT18 | B-A | BA05 | 93 | 0.22 |
| 18 | 7f9h_C_DT18_DT19 | BBB | BB01 | 61 | 0.22 |
| 19 | 7f9h_C_DT19_DT20 | BBB | BB01 | 95 | 0.12 |
| 20 | 7f9h_C_DT20_DC21 | BBB | BB01 | 82 | 0.16 |
| 21 | 7f9h_C_DC21_DG22 | miB | BB15 | 32 | 0.32 |
| 22 | 7f9h_D_DC1_DG2 | A-B | AB05 | 83 | 0.22 |
| 23 | 7f9h_D_DG2_DA3 | BBB | BB00 | 92 | 0.19 |
| 24 | 7f9h_D_DA3_DA4 | BBB | BB01 | 93 | 0.15 |
| 25 | 7f9h_D_DA4_DA5 | BBB | BB01 | 88 | 0.12 |
| 26 | 7f9h_D_DA5_DT6 | BBB | BB01 | 94 | 0.15 |
| 27 | 7f9h_D_DT6_DA7 | BBB | BB00 | 74 | 0.21 |
| 28 | 7f9h_D_DA7_DT8 | B-A | BA05 | 36 | 0.16 |
| 29 | 7f9h_D_DT8_CBR9 | BBB | BB01 | 32 | 0.25 |
| 30 | 7f9h_D_CBR9_DT10 | B-A | BA01 | 36 | 0.24 |
| 31 | 7f9h_D_DT10_DA11 | NAN | NANT | 0 | 0.56 |
| 32 | 7f9h_D_DA11_DT12 | NAN | NANT | 0 | 0.81 |
| 33 | 7f9h_D_DT12_DA13 | A-B | AB01 | 82 | 0.39 |
| 34 | 7f9h_D_DA13_DG14 | BB2 | BB07 | 31 | 0.54 |
| 35 | 7f9h_D_DG14_DA15 | BBB | BB01 | 88 | 0.14 |
| 36 | 7f9h_D_DA15_DT16 | BBB | BB00 | 67 | 0.27 |
| 37 | 7f9h_D_DT16_DA17 | BBB | BB00 | 81 | 0.13 |
| 38 | 7f9h_D_DA17_DT18 | B-A | BA05 | 95 | 0.23 |
| 39 | 7f9h_D_DT18_DT19 | BBB | BB01 | 61 | 0.23 |
| 40 | 7f9h_D_DT19_DT20 | BBB | BB01 | 94 | 0.12 |
| 41 | 7f9h_D_DT20_DC21 | BBB | BB00 | 68 | 0.18 |
| 42 | 7f9h_D_DC21_DG22 | miB | BB15 | 32 | 0.32 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
Show
| Color by conformation group (pyramids) | |
|---|---|
| group | |||||||||
| visible |
| Color by NtC (balls) |
|---|
| A | ||||
|---|---|---|---|---|
| A-B | ||||
|---|---|---|---|---|
| B-A | ||||
|---|---|---|---|---|
| B | ||||
|---|---|---|---|---|
| IC | ||||
|---|---|---|---|---|
| OPN | ||||
|---|---|---|---|---|
| Z | ||||
|---|---|---|---|---|
| N | ||||
|---|---|---|---|---|