DNATCO v4.1: results

Crystal structure of xanthine riboswitch with xanthine, iridium hexammine soak

Results of the assignment of 88 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.

Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.

step number	Step name	CANA	NtC	confal	rmsd	NtCs
01	7elp_A_G2_A3	AAA	AA04	87	0.10	AA04
02	7elp_A_A3_G4	AAA	AA08	70	0.23	AA08
03	7elp_A_G4_U5	AAA	AA08	86	0.22	AA08
04	7elp_A_U5_A6	A-B	AB05	79	0.27	AB05
05	7elp_A_A6_G7	OPN	OP15	53	0.44	OP15
06	7elp_A_G7_A8	AAA	AA00	61	0.32	AA00
07	7elp_A_A8_A9	AAA	AA00	11	0.43	AA00
08	7elp_A_A9_G10	AAA	AA00	71	0.30	AA00
09	7elp_A_G10_C11	AAA	AA00	87	0.15	AA00
10	7elp_A_C11_G12	A-B	AB05	77	0.15	AB05
11	7elp_A_G12_U13	OPN	OP15	47	0.40	OP15
12	7elp_A_U13_U14	AAA	AA08	75	0.16	AA08
13	7elp_A_U14_C15	AAA	AA00	88	0.24	AA00
14	7elp_A_C15_A16	AAw	AA01	56	0.21	AA01
15	7elp_A_A16_G17	AAA	AA08	64	0.40	AA08
16	7elp_A_G17_C18	AAA	AA08	86	0.17	AA08
17	7elp_A_C18_G19	AAA	AA00	71	0.18	AA00
18	7elp_A_G19_G20	AAA	AA00	81	0.14	AA00
19	7elp_A_G20_C21	AAA	AA08	87	0.19	AA08
20	7elp_A_C21_C22	AAA	AA08	71	0.21	AA08
21	7elp_A_C22_G23	AAA	AA00	81	0.23	AA00
22	7elp_A_G23_A24	OPN	OP03	86	0.20	OP03
23	7elp_A_A24_A25	AAA	AA00	53	0.25	AA00
24	7elp_A_A25_A26	NAN	NANT	0	0.52	AA01
25	7elp_A_A26_G27	NAN	NANT	0	0.99	AA08
26	7elp_A_G27_G28	AAA	AA08	83	0.23	AA08
27	7elp_A_G28_C29	AAA	AA08	93	0.12	AA08
28	7elp_A_C29_C30	AAA	AA00	94	0.13	AA00
29	7elp_A_C30_G31	AAA	AA00	92	0.16	AA00
30	7elp_A_G31_C32	AAA	AA00	67	0.19	AA00
31	7elp_A_C32_C33	AAA	AA00	43	0.32	AA00
32	7elp_A_C33_C34	NAN	NANT	0	1.37	AA10
33	7elp_A_C34_G35	NAN	NANT	0	1.44	OP30
34	7elp_A_G35_G36	NAN	NANT	0	1.30	OP30
35	7elp_A_G36_A37	AAA	AA00	53	0.28	AA00
36	7elp_A_A37_A38	AAA	AA00	75	0.16	AA00
37	7elp_A_A38_A39	AAA	AA08	77	0.26	AA08
38	7elp_A_A39_U40	AAA	AA00	91	0.15	AA00
39	7elp_A_U40_U41	AAA	AA00	77	0.29	AA00
40	7elp_A_U41_G42	AAA	AA08	72	0.31	AA08
41	7elp_A_G42_C43	AAA	AA00	93	0.12	AA00
42	7elp_A_C43_U44	AAA	AA00	69	0.19	AA00
43	7elp_A_U44_C45	AAA	AA04	94	0.14	AA04
44	7elp_A_C45_C46	AAA	AA04	80	0.22	AA04
45	7elp_B_G2_A3	AAA	AA08	83	0.24	AA08
46	7elp_B_A3_G4	AAA	AA00	71	0.17	AA00
47	7elp_B_G4_U5	AAA	AA00	71	0.28	AA00
48	7elp_B_U5_A6	A-B	AB05	56	0.21	AB05
49	7elp_B_A6_G7	NAN	NANT	0	0.44	OP15
50	7elp_B_G7_A8	AAw	AA01	68	0.25	AA01
51	7elp_B_A8_A9	NAN	NANT	0	0.62	AA10
52	7elp_B_A9_G10	AAA	AA08	55	0.35	AA08
53	7elp_B_G10_C11	AAA	AA00	50	0.20	AA00
54	7elp_B_C11_G12	A-B	AB05	76	0.24	AB05
55	7elp_B_G12_U13	OPN	OP15	55	0.31	OP15
56	7elp_B_U13_U14	AAA	AA00	73	0.23	AA00
57	7elp_B_U14_C15	AAw	AA06	61	0.38	AA06
58	7elp_B_C15_A16	AAA	AA08	72	0.30	AA08
59	7elp_B_A16_G17	AAA	AA00	60	0.40	AA00
60	7elp_B_G17_C18	NAN	NANT	0	0.55	AA11
61	7elp_B_C18_G19	NAN	NANT	0	0.63	AA10
62	7elp_B_G19_G20	AAA	AA00	64	0.20	AA00
63	7elp_B_G20_C21	AAA	AA00	79	0.10	AA00
64	7elp_B_C21_C22	AAA	AA08	88	0.20	AA08
65	7elp_B_C22_G23	AAA	AA08	88	0.23	AA08
66	7elp_B_G23_A24	OPN	OP04	60	0.38	OP04
67	7elp_B_A24_A25	AAA	AA08	82	0.29	AA08
68	7elp_B_A25_A26	AAA	AA00	76	0.20	AA00
69	7elp_B_A26_G27	AAA	AA08	6	0.89	AA08
70	7elp_B_G27_G28	AAA	AA08	82	0.24	AA08
71	7elp_B_G28_C29	AAA	AA03	85	0.14	AA03
72	7elp_B_C29_C30	NAN	NANT	0	0.70	AA11
73	7elp_B_C30_G31	AAA	AA08	73	0.39	AA08
74	7elp_B_G31_C32	AAA	AA08	75	0.25	AA08
75	7elp_B_C32_C33	AAA	AA00	33	0.30	AA00
76	7elp_B_C33_C34	NAN	NANT	0	0.73	AB05
77	7elp_B_C34_G35	NAN	NANT	0	0.95	IC03
78	7elp_B_G35_G36	NAN	NANT	0	1.55	OP30
79	7elp_B_G36_A37	AAA	AA00	52	0.27	AA00
80	7elp_B_A37_A38	AAA	AA00	83	0.19	AA00
81	7elp_B_A38_A39	AAA	AA00	85	0.21	AA00
82	7elp_B_A39_U40	AAA	AA00	72	0.23	AA00
83	7elp_B_U40_U41	AAA	AA00	70	0.26	AA00
84	7elp_B_U41_G42	AAA	AA04	74	0.25	AA04
85	7elp_B_G42_C43	AAw	AA11	88	0.22	AA11
86	7elp_B_C43_U44	AAA	AA08	37	0.36	AA08
87	7elp_B_U44_C45	AAA	AA00	66	0.29	AA00
88	7elp_B_C45_C46	AAw	AA10	65	0.42	AA10

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

step:
Table of conformers

	δ1	ε1	ζ1	α2	β2	γ2	δ2	χ1	χ2	μ	NN	CC
step_torsions
ntC_average
Δ torsions
torsion scores

comments	step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA

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Results of the assignment of 88 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Restraints

User-based restraints

Definitions

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