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Conformers: ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
Structure of a protein from bacteria

Results of the assignment of 105 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
0017el1_B_G1_G2AAAAA00800.14 AA00
0027el1_B_G2_A3AAAAA00220.35 AA00
0037el1_B_A3_A4AAAAA00850.09 AA00
0047el1_B_A4_A5AAAAA00720.15 AA00
0057el1_B_A5_U6AAAAA00550.26 AA00
0067el1_B_U6_U7AAAAA00920.12 AA00
0077el1_B_U7_A8AAAAA00910.10 AA00
0087el1_B_A8_G9AAAAA00630.22 AA00
0097el1_B_G9_G10AAAAA00810.20 AA00
0107el1_B_G10_U11AAAAA00870.14 AA00
0117el1_B_U11_G12AAAAA00800.14 AA00
0127el1_B_G12_C13AAAAA00980.11 AA00
0137el1_B_C13_G14AAAAA00640.22 AA00
0147el1_B_G14_C15AAAAA00570.26 AA00
0157el1_B_C15_U16AAAAA00840.22 AA00
0167el1_B_U16_U17AAwAA01660.19 AA01
0177el1_B_U17_G18AAAAA00750.21 AA00
0187el1_B_G18_G19AAAAA08840.18 AA08
0197el1_B_G19_C20AAwAA01850.21 AA01
0207el1_B_C20_G21AAAAA00290.50 AA00
0217el1_B_G21_U22AAAAA00900.13 AA00
0227el1_B_U22_U23AAAAA00870.21 AA00
0237el1_B_U23_U24AAAAA00750.21 AA00
0247el1_B_U24_U25AAAAA00930.12 AA00
0257el1_B_U25_A26AAAAA00850.11 AA00
0267el1_B_A26_G27AAAAA00940.08 AA00
0277el1_B_G27_U28AAAAA00860.11 AA00
0287el1_B_U28_A29AAAAA00790.09 AA00
0297el1_B_A29_C30AAAAA00770.30 AA00
0307el1_B_C30_U31AAAAA00600.29 AA00
0317el1_B_U31_C32AAAAA00920.13 AA00
0327el1_B_C32_U33AAAAA00910.16 AA00
0337el1_B_U33_G34AAAAA00840.17 AA00
0347el1_B_G34_G35AAAAA00710.28 AA00
0357el1_B_G35_A36OPNOP03860.15 OP03
0367el1_B_A36_A37AAAAA08830.23 AA08
0377el1_B_A37_A38NANNANT00.30 AA06
0387el1_B_A38_C39NANNANT00.92 AA08
0397el1_B_C39_A40AAAAA00800.11 AA00
0407el1_B_A40_G41AAAAA00810.09 AA00
0417el1_B_G41_A42AAAAA00870.16 AA00
0427el1_B_A42_A43AAAAA00800.24 AA00
0437el1_B_A43_U44A-BAB05840.25 AB05
0447el1_B_U44_C45NANNANT01.45 OP24
0457el1_B_C45_U46AAAAA08580.41 AA08
0467el1_B_U46_A47AAAAA00620.17 AA00
0477el1_B_A47_C48AAAAA00790.13 AA00
0487el1_B_C48_U49AAAAA00890.16 AA00
0497el1_B_U49_A50AAAAA00870.18 AA00
0507el1_B_A50_A51AAAAA00920.16 AA00
0517el1_B_A51_A52AAAAA00940.09 AA00
0527el1_B_A52_A53AAAAA00910.15 AA00
0537el1_B_A53_C54AAAAA00930.16 AA00
0547el1_B_C54_A55NANNANT02.06 OP31
0557el1_B_A55_A56NANNANT00.80 OPS1
0567el1_B_A56_G57NANNANT00.91 AA08
0577el1_B_G57_G58AAAAA00610.28 AA00
0587el1_B_G58_C59AAwAA01820.24 AA01
0597el1_B_C59_A60AAAAA08420.58 AA08
0607el1_B_A60_A61A-BAB05840.22 AB05
0617el1_B_A61_A62NANNANT00.97 OP22
0627el1_B_A62_A63NANNANT01.83 BB14
0637el1_B_A63_U64NANNANT00.44 OP13
0647el1_B_U64_G65NANNANT01.48 OP05
0657el1_B_G65_C66AAAAA00420.31 AA00
0667el1_B_C66_C67AAAAA00790.23 AA00
0677el1_B_C67_G68AAAAA00810.18 AA00
0687el1_B_G68_U69NANNANT00.80 IC02
0697el1_B_U69_G70OPNOP11850.33 OP11
0707el1_B_G70_U71AAAAA00800.15 AA00
0717el1_B_U71_U72AAAAA09650.18 AA09
0727el1_C_DC1_DT2NANNANT00.59 BB16
0737el1_C_DT2_DA3BBBBB00750.17 BB00
0747el1_C_DA3_DT4B-ABA05870.29 BA05
0757el1_C_DT4_DT5A-BAB03820.30 AB03
0767el1_C_DT5_DC6BBBBB01530.23 BB01
0777el1_C_DC6_DA7BBBBB00290.23 BB00
0787el1_C_DA7_DA8B12BB04740.15 BB04
0797el1_C_DA8_DG9NANNANT00.47 OP17
0807el1_C_DG9_DC10BBBBB00110.55 BB00
0817el1_C_DC10_DC11BBBBB00540.23 BB00
0827el1_C_DC11_DA12BBBBB01720.13 BB01
0837el1_C_DA12_DA13NANNANT00.33 BA05
0847el1_C_DA13_DG14AAAAA00570.38 AA00
0857el1_C_DG14_DC15AAAAA00890.26 AA00
0867el1_C_DC15_DG16AAAAA00770.25 AA00
0877el1_C_DG16_DC17AAAAA08820.20 AA08
0887el1_C_DC17_DA18AAAAA00810.15 AA00
0897el1_C_DA18_DC19AAAAA08850.14 AA08
0907el1_C_DC19_DC20AAAAA00940.17 AA00
0917el1_C_DC20_DT21AAAAA00920.19 AA00
0927el1_C_DT21_DA22AAAAA00740.23 AA00
0937el1_C_DA22_DA23AAAAA00920.13 AA00
0947el1_C_DA23_DT24AAAAA00860.20 AA00
0957el1_C_DT24_DT25AAAAA00800.24 AA00
0967el1_C_DT25_DT26AAAAA00770.18 AA00
0977el1_C_DT26_DC27NANNANT00.46 AB04
0987el1_C_DC27_DC28BBBBB00210.39 BB00
0997el1_D_DT1_DT2BBBBB00910.19 BB00
1007el1_D_DT2_DG3BB2BB08380.31 BB08
1017el1_D_DG3_DA4BBBBB00400.54 BB00
1027el1_D_DA4_DA5BB2BB07440.26 BB07
1037el1_D_DA5_DT6BBBBB00700.25 BB00
1047el1_D_DT6_DA7NANNANT00.20 BB04
1057el1_D_DA7_DG8B-ABA05810.20 BA05

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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