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Conformers: ABBIImiBZICOPNSYNN
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RNA kink-turn motif with 2-aminopurine

Results of the assignment of 72 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
017ei8_A_G1_G2AAAAA00820.18 AA00
027ei8_A_G2_C3AAAAA00930.16 AA00
037ei8_A_C3_2PR4AAAAA00610.31 AA00
047ei8_A_2PR4_2PR5NANNANT01.28 BB2S
057ei8_A_2PR5_2PR6NANNANT00.69 OP21
067ei8_A_2PR6_2PR7NANNANT00.53 OP20
077ei8_A_2PR7_A8NANNANT00.74 OP26
087ei8_A_A8_A9AAAAA00660.25 AA00
097ei8_A_A9_C10AAAAA08650.41 AA08
107ei8_A_C10_C11AAAAA08750.21 AA08
117ei8_A_C11_G12AAAAA00740.18 AA00
127ei8_A_G12_G13AAwAA10740.19 AA10
137ei8_A_G13_G14AAAAA08700.44 AA08
147ei8_A_G14_G15NANNANT00.59 AB05
157ei8_A_G15_A16NANNANT00.86 OP22
167ei8_A_A16_G17OPNOP24720.29 OP24
177ei8_A_G17_C18AAAAA00790.19 AA00
187ei8_A_C18_C19AAAAA08520.37 AA08
197ei8_B_G1_G2AAAAA08780.22 AA08
207ei8_B_G2_C3AAAAA00580.16 AA00
217ei8_B_C3_2PR4AAAAA00730.32 AA00
227ei8_B_2PR4_2PR5NANNANT01.11 BB2S
237ei8_B_2PR5_2PR6NANNANT00.71 OP21
247ei8_B_2PR6_2PR7NANNANT00.56 OP20
257ei8_B_2PR7_A8OPNOP10500.17 OP10
267ei8_B_A8_A9AAAAA00620.29 AA00
277ei8_B_A9_C10AAAAA08750.39 AA08
287ei8_B_C10_C11AAAAA00480.38 AA00
297ei8_B_C11_G12AAAAA00670.27 AA00
307ei8_B_G12_G13NANNANT00.34 AA06
317ei8_B_G13_G14AAAAA08590.45 AA08
327ei8_B_G14_G15NANNANT00.70 AA03
337ei8_B_G15_A16NANNANT00.71 OP22
347ei8_B_A16_G17NANNANT00.43 OP24
357ei8_B_G17_C18AAAAA00480.21 AA00
367ei8_B_C18_C19AAAAA00760.17 AA00
377ei8_C_G1_G2AAAAA00750.24 AA00
387ei8_C_G2_C3AAAAA00850.17 AA00
397ei8_C_C3_2PR4AAAAA00770.32 AA00
407ei8_C_2PR4_2PR5NANNANT01.25 BB2S
417ei8_C_2PR5_2PR6NANNANT00.66 OP21
427ei8_C_2PR6_2PR7NANNANT00.83 OP20
437ei8_C_2PR7_A8NANNANT00.75 OP26
447ei8_C_A8_A9AAAAA00570.25 AA00
457ei8_C_A9_C10AAAAA08330.53 AA08
467ei8_C_C10_C11AAAAA00750.20 AA00
477ei8_C_C11_G12AAAAA08820.16 AA08
487ei8_C_G12_G13AAwAA01370.22 AA01
497ei8_C_G13_G14AAAAA08590.53 AA08
507ei8_C_G14_G15NANNANT00.58 AB05
517ei8_C_G15_A16NANNANT00.69 OP22
527ei8_C_A16_G17OPNOP24830.22 OP24
537ei8_C_G17_C18AAAAA00750.21 AA00
547ei8_C_C18_C19AAAAA00440.24 AA00
557ei8_D_G1_G2AAAAA00710.27 AA00
567ei8_D_G2_C3AAAAA08810.21 AA08
577ei8_D_C3_2PR4AAAAA00380.28 AA00
587ei8_D_2PR4_2PR5NANNANT01.13 BB2S
597ei8_D_2PR5_2PR6NANNANT00.77 OP21
607ei8_D_2PR6_2PR7NANNANT00.59 OP20
617ei8_D_2PR7_A8OPNOP10600.18 OP10
627ei8_D_A8_A9AAAAA08770.26 AA08
637ei8_D_A9_C10AAAAA08790.38 AA08
647ei8_D_C10_C11AAAAA00400.37 AA00
657ei8_D_C11_G12AAAAA08710.23 AA08
667ei8_D_G12_G13NANNANT00.36 AA10
677ei8_D_G13_G14AAAAA08710.47 AA08
687ei8_D_G14_G15A-BAB05380.48 AB05
697ei8_D_G15_A16NANNANT00.72 OP22
707ei8_D_A16_G17OPNOP24610.29 OP24
717ei8_D_G17_C18AAAAA08820.21 AA08
727ei8_D_C18_C19AAAAA00220.32 AA00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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