Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
RNA kink-turn motif with 2-aminopurine
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 36 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 7ei7_A_G1_G2 | AAA | AA08 | 79 | 0.21 |
| 02 | 7ei7_A_G2_C3 | AAA | AA08 | 81 | 0.22 |
| 03 | 7ei7_A_C3_G4 | AAA | AA08 | 78 | 0.18 |
| 04 | 7ei7_A_G4_A5 | NAN | NANT | 0 | 1.23 |
| 05 | 7ei7_A_A5_2PR6 | NAN | NANT | 0 | 0.73 |
| 06 | 7ei7_A_2PR6_G7 | NAN | NANT | 0 | 0.99 |
| 07 | 7ei7_A_G7_A8 | NAN | NANT | 0 | 1.50 |
| 08 | 7ei7_A_A8_A9 | AAA | AA08 | 44 | 0.31 |
| 09 | 7ei7_A_A9_C10 | AAA | AA08 | 35 | 0.49 |
| 10 | 7ei7_A_C10_C11 | AAA | AA08 | 60 | 0.32 |
| 11 | 7ei7_A_C11_G12 | AAA | AA00 | 68 | 0.18 |
| 12 | 7ei7_A_G12_G13 | AAA | AA08 | 80 | 0.21 |
| 13 | 7ei7_A_G13_G14 | AAA | AA08 | 66 | 0.45 |
| 14 | 7ei7_A_G14_G15 | NAN | NANT | 0 | 0.79 |
| 15 | 7ei7_A_G15_A16 | NAN | NANT | 0 | 0.87 |
| 16 | 7ei7_A_A16_G17 | OPN | OP24 | 12 | 0.45 |
| 17 | 7ei7_A_G17_C18 | AAA | AA08 | 68 | 0.20 |
| 18 | 7ei7_A_C18_C19 | AAA | AA00 | 87 | 0.23 |
| 19 | 7ei7_B_G1_G2 | AAA | AA00 | 82 | 0.20 |
| 20 | 7ei7_B_G2_C3 | AAA | AA00 | 84 | 0.20 |
| 21 | 7ei7_B_C3_G4 | AAA | AA00 | 55 | 0.33 |
| 22 | 7ei7_B_G4_A5 | NAN | NANT | 0 | 1.12 |
| 23 | 7ei7_B_A5_2PR6 | NAN | NANT | 0 | 0.69 |
| 24 | 7ei7_B_2PR6_G7 | NAN | NANT | 0 | 1.03 |
| 25 | 7ei7_B_G7_A8 | OPN | OP10 | 74 | 0.18 |
| 26 | 7ei7_B_A8_A9 | AAA | AA00 | 56 | 0.30 |
| 27 | 7ei7_B_A9_C10 | AAA | AA00 | 28 | 0.50 |
| 28 | 7ei7_B_C10_C11 | AAA | AA00 | 80 | 0.24 |
| 29 | 7ei7_B_C11_G12 | AAA | AA00 | 72 | 0.22 |
| 30 | 7ei7_B_G12_G13 | AAA | AA00 | 50 | 0.25 |
| 31 | 7ei7_B_G13_G14 | AAA | AA08 | 71 | 0.48 |
| 32 | 7ei7_B_G14_G15 | NAN | NANT | 0 | 0.54 |
| 33 | 7ei7_B_G15_A16 | NAN | NANT | 0 | 0.96 |
| 34 | 7ei7_B_A16_G17 | NAN | NANT | 0 | 1.04 |
| 35 | 7ei7_B_G17_C18 | AAA | AA00 | 49 | 0.28 |
| 36 | 7ei7_B_C18_C19 | AAA | AA00 | 75 | 0.19 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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