Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
GNRA tetraloop receptor motif composed of RNA and DNA
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 34 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 7ei5_A_C1_A2 | AAw | AA10 | 56 | 0.28 |
| 02 | 7ei5_A_A2_G3 | AAA | AA08 | 89 | 0.21 |
| 03 | 7ei5_A_G3_C4 | AAA | AA00 | 90 | 0.14 |
| 04 | 7ei5_A_C4_A5 | AAA | AA00 | 88 | 0.15 |
| 05 | 7ei5_A_A5_G6 | AAA | AA08 | 86 | 0.23 |
| 06 | 7ei5_A_G6_G7 | AAA | AA00 | 76 | 0.17 |
| 07 | 7ei5_A_G7_C8 | AAA | AA00 | 45 | 0.20 |
| 08 | 7ei5_A_C8_U9 | AAA | AA00 | 87 | 0.27 |
| 09 | 7ei5_A_U9_A10 | NAN | NANT | 0 | 0.39 |
| 10 | 7ei5_A_A10_A11 | NAN | NANT | 0 | 0.54 |
| 11 | 7ei5_A_A11_G12 | AAA | AA08 | 67 | 0.38 |
| 12 | 7ei5_A_G12_G13 | AAA | AA08 | 92 | 0.21 |
| 13 | 7ei5_A_G13_C14 | AAA | AA00 | 79 | 0.13 |
| 14 | 7ei5_A_C14_A15 | AAA | AA00 | 86 | 0.28 |
| 15 | 7ei5_A_A15_U16 | AAA | AA00 | 84 | 0.19 |
| 16 | 7ei5_A_U16_G17 | AAA | AA08 | 81 | 0.17 |
| 17 | 7ei5_A_G17_A18 | OPN | OP03 | 78 | 0.20 |
| 18 | 7ei5_A_A18_A19 | AAA | AA00 | 59 | 0.30 |
| 19 | 7ei5_A_A19_A20 | AAA | AA00 | 29 | 0.28 |
| 20 | 7ei5_A_A20_DG21 | AAA | AA04 | 40 | 0.69 |
| 21 | 7ei5_A_DG21_DT22 | AAA | AA00 | 90 | 0.17 |
| 22 | 7ei5_A_DT22_DG23 | AAA | AA00 | 87 | 0.14 |
| 23 | 7ei5_A_DG23_DC24 | AAA | AA00 | 80 | 0.20 |
| 24 | 7ei5_A_DC24_DT25 | AAA | AA00 | 87 | 0.19 |
| 25 | 7ei5_A_DT25_DA26 | ICL | IC01 | 76 | 0.23 |
| 26 | 7ei5_A_DA26_DT27 | NAN | NANT | 0 | 0.50 |
| 27 | 7ei5_A_DT27_DG28 | NAN | NANT | 0 | 0.74 |
| 28 | 7ei5_A_DG28_DC29 | AAA | AA00 | 77 | 0.23 |
| 29 | 7ei5_A_DC29_DC30 | AAA | AA00 | 68 | 0.20 |
| 30 | 7ei5_A_DC30_DT31 | AAw | AA01 | 21 | 0.32 |
| 31 | 7ei5_A_DT31_DG32 | AAA | AA00 | 61 | 0.43 |
| 32 | 7ei5_A_DG32_DC33 | AAA | AA00 | 56 | 0.36 |
| 33 | 7ei5_A_DC33_DT34 | NAN | NANT | 0 | 0.48 |
| 34 | 7ei5_A_DT34_DG35 | BBw | BB16 | 36 | 0.67 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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| Color by conformation group (pyramids) | |
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