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Conformers: ABBIImiBZICOPNSYNN
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Thermus thermophilus transcription initiation complex containing a template-strand pyrimidine at position TSS-2 and GpG RNA primer

Results of the assignment of 82 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
017eh2_G_DT1_DA2NANNANT01.13 ZZS1
027eh2_G_DA2_DT3NANNANT01.02 OP14
037eh2_G_DT3_DA4NANNANT00.60 BB15
047eh2_G_DA4_DA5BBBBB00440.35 BB00
057eh2_G_DA5_DT6NANNANT00.63 OP20
067eh2_G_DT6_DG7NANNANT02.24 OP19
077eh2_G_DG7_DG8NANNANT00.99 IC05
087eh2_G_DG8_DG9BBBBB00690.24 BB00
097eh2_G_DG9_DA10B12BB04270.48 BB04
107eh2_G_DA10_DG11miBBB12470.48 BB12
117eh2_G_DG11_DC12NANNANT00.81 ZZ01
127eh2_G_DC12_DT13NANNANT01.13 BB10
137eh2_G_DT13_DG14NANNANT01.63 IC05
147eh2_G_DG14_DT15NANNANT01.58 IC03
157eh2_G_DT15_DC16miBBB15560.30 BB15
167eh2_G_DC16_DA17miBBB10490.28 BB10
177eh2_G_DA17_DC18BBBBB01210.35 BB01
187eh2_G_DC18_DG19BBBBB00440.20 BB00
197eh2_G_DG19_DG20B12BB04110.39 BB04
207eh2_G_DG20_DA21BBBBB00490.34 BB00
217eh2_G_DA21_DT22BBBBB00840.20 BB00
227eh2_G_DT22_DG23BBBBB00660.17 BB00
237eh2_G_DG23_DC24NANNANT00.37 BA16
247eh2_G_DC24_DA25NANNANT00.57 AA01
257eh2_H_DT3_DG4AAAAA00380.31 AA00
267eh2_H_DG4_DC5AAwAA01310.40 AA01
277eh2_H_DC5_DA6NANNANT00.60 BB03
287eh2_H_DA6_DT7NANNANT00.41 BB10
297eh2_H_DT7_DC8B12BB04610.17 BB04
307eh2_H_DC8_DC9BBBBB00590.20 BB00
317eh2_H_DC9_DG10BBBBB00620.10 BB00
327eh2_H_DG10_DT11BBBBB00810.15 BB00
337eh2_H_DT11_DG12B-ABA08660.20 BA08
347eh2_H_DG12_DA13AAAAA00730.28 AA00
357eh2_H_DA13_DG14NANNANT00.84 OP06
367eh2_H_DG14_DC15AAAAA00620.33 AA00
377eh2_H_DC15_DC16AAAAA08590.21 AA08
387eh2_H_DC16_DT17AAAAA04780.33 AA04
397eh2_H_DT17_DA18A-BAB05850.36 AB05
407eh2_H_DA18_DG19BBBBB00800.33 BB00
417eh2_I_G1_G2AAAAA00900.12 AA00
427eh2_J_DT1_DA2NANNANT00.96 ZZS1
437eh2_J_DA2_DT3NANNANT01.26 OP14
447eh2_J_DT3_DA4BBwBB16530.24 BB16
457eh2_J_DA4_DA5BBBBB00800.22 BB00
467eh2_J_DA5_DT6NANNANT00.58 OP20
477eh2_J_DT6_DG7NANNANT02.20 OP19
487eh2_J_DG7_DG8NANNANT01.01 IC05
497eh2_J_DG8_DG9BBBBB00580.30 BB00
507eh2_J_DG9_DA10B12BB04570.40 BB04
517eh2_J_DA10_DG11miBBB12540.41 BB12
527eh2_J_DG11_DC12NANNANT00.82 ZZ01
537eh2_J_DC12_DT13NANNANT01.05 BB07
547eh2_J_DT13_DG14NANNANT01.51 IC05
557eh2_J_DG14_DT15NANNANT01.63 IC03
567eh2_J_DT15_DC16miBBB15480.34 BB15
577eh2_J_DC16_DA17miBBB10310.32 BB10
587eh2_J_DA17_DC18A-BAB03460.34 AB03
597eh2_J_DC18_DG19B12BB04750.27 BB04
607eh2_J_DG19_DG20B12BB04450.38 BB04
617eh2_J_DG20_DA21B12BB04510.16 BB04
627eh2_J_DA21_DT22BBBBB00850.19 BB00
637eh2_J_DT22_DG23BBwBB02170.33 BB02
647eh2_J_DG23_DC24NANNANT00.48 BB05
657eh2_J_DC24_DA25NANNANT00.60 BB03
667eh2_Q_DT3_DG4NANNANT00.36 AA00
677eh2_Q_DG4_DC5NANNANT00.48 AA01
687eh2_Q_DC5_DA6NANNANT00.61 BB03
697eh2_Q_DA6_DT7NANNANT00.40 BB10
707eh2_Q_DT7_DC8B12BB04430.20 BB04
717eh2_Q_DC8_DC9BBBBB00610.20 BB00
727eh2_Q_DC9_DG10BBBBB00770.18 BB00
737eh2_Q_DG10_DT11miBBB15630.23 BB15
747eh2_Q_DT11_DG12B-ABA08820.17 BA08
757eh2_Q_DG12_DA13AAAAA00610.30 AA00
767eh2_Q_DA13_DG14NANNANT00.89 OP06
777eh2_Q_DG14_DC15AAAAA00660.31 AA00
787eh2_Q_DC15_DC16AAAAA00630.18 AA00
797eh2_Q_DC16_DT17AAAAA00620.30 AA00
807eh2_Q_DT17_DA18A-BAB05790.28 AB05
817eh2_Q_DA18_DG19BBBBB00600.42 BB00
827eh2_R_G1_G2AAAAA00920.14 AA00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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