Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
Thermus thermophilus RNA polymerase transcription initiation complex containing a template-strand purine at position TSS-2, UpA RNA primer and CMPcPP
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 41 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 7eh0_G_DT1_DA2 | NAN | NANT | 0 | 0.97 |
| 02 | 7eh0_G_DA2_DT3 | NAN | NANT | 0 | 0.94 |
| 03 | 7eh0_G_DT3_DA4 | BBw | BB16 | 63 | 0.34 |
| 04 | 7eh0_G_DA4_DA5 | BBB | BB00 | 63 | 0.27 |
| 05 | 7eh0_G_DA5_DT6 | NAN | NANT | 0 | 0.62 |
| 06 | 7eh0_G_DT6_DG7 | NAN | NANT | 0 | 2.22 |
| 07 | 7eh0_G_DG7_DG8 | NAN | NANT | 0 | 0.98 |
| 08 | 7eh0_G_DG8_DG9 | NAN | NANT | 0 | 0.57 |
| 09 | 7eh0_G_DG9_DA10 | BBB | BB00 | 31 | 0.37 |
| 10 | 7eh0_G_DA10_DG11 | miB | BB12 | 75 | 0.38 |
| 11 | 7eh0_G_DG11_DC12 | NAN | NANT | 0 | 1.60 |
| 12 | 7eh0_G_DC12_DT13 | NAN | NANT | 0 | 1.27 |
| 13 | 7eh0_G_DT13_DG14 | NAN | NANT | 0 | 0.99 |
| 14 | 7eh0_G_DG14_DT15 | NAN | NANT | 0 | 1.21 |
| 15 | 7eh0_G_DT15_DC16 | NAN | NANT | 0 | 0.60 |
| 16 | 7eh0_G_DC16_DA17 | NAN | NANT | 0 | 0.57 |
| 17 | 7eh0_G_DA17_DC18 | BBB | BB01 | 19 | 0.43 |
| 18 | 7eh0_G_DC18_DG19 | BBB | BB00 | 67 | 0.14 |
| 19 | 7eh0_G_DG19_DG20 | B12 | BB04 | 15 | 0.35 |
| 20 | 7eh0_G_DG20_DA21 | BBB | BB00 | 51 | 0.38 |
| 21 | 7eh0_G_DA21_DT22 | BBB | BB01 | 44 | 0.24 |
| 22 | 7eh0_G_DT22_DG23 | BBw | BB02 | 29 | 0.32 |
| 23 | 7eh0_G_DG23_DC24 | NAN | NANT | 0 | 0.45 |
| 24 | 7eh0_G_DC24_DA25 | NAN | NANT | 0 | 0.60 |
| 25 | 7eh0_H_DT3_DG4 | AAA | AA00 | 42 | 0.39 |
| 26 | 7eh0_H_DG4_DC5 | NAN | NANT | 0 | 0.43 |
| 27 | 7eh0_H_DC5_DA6 | NAN | NANT | 0 | 0.48 |
| 28 | 7eh0_H_DA6_DT7 | miB | BB15 | 11 | 0.38 |
| 29 | 7eh0_H_DT7_DC8 | BBB | BB00 | 79 | 0.20 |
| 30 | 7eh0_H_DC8_DC9 | BBB | BB00 | 65 | 0.21 |
| 31 | 7eh0_H_DC9_DG10 | BBB | BB00 | 64 | 0.21 |
| 32 | 7eh0_H_DG10_DT11 | BBB | BB00 | 29 | 0.20 |
| 33 | 7eh0_H_DT11_DG12 | B-A | BA08 | 84 | 0.20 |
| 34 | 7eh0_H_DG12_DA13 | AAA | AA00 | 31 | 0.33 |
| 35 | 7eh0_H_DA13_DG14 | NAN | NANT | 0 | 0.87 |
| 36 | 7eh0_H_DG14_DT15 | AAA | AA00 | 52 | 0.38 |
| 37 | 7eh0_H_DT15_DA16 | AAA | AA08 | 76 | 0.24 |
| 38 | 7eh0_H_DA16_DA17 | AAA | AA04 | 60 | 0.38 |
| 39 | 7eh0_H_DA17_DA18 | A-B | AB01 | 37 | 0.37 |
| 40 | 7eh0_H_DA18_DG19 | BBB | BB00 | 54 | 0.35 |
| 41 | 7eh0_I_U1_A2 | AAA | AA00 | 26 | 0.28 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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