Conformers:
ABBIImiBZICOPNSYNN
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RNA kink-turn motif composed of RNA, DNA and 2'-O-methyl RNA
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 18 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 7efi_A_G1_G2 | AAA | AA00 | 60 | 0.19 |
| 02 | 7efi_A_G2_C3 | AAA | AA00 | 79 | 0.26 |
| 03 | 7efi_A_C3_G4 | AAA | AA00 | 72 | 0.26 |
| 04 | 7efi_A_G4_A5 | NAN | NANT | 0 | 0.99 |
| 05 | 7efi_A_A5_A6 | NAN | NANT | 0 | 0.57 |
| 06 | 7efi_A_A6_G7 | NAN | NANT | 0 | 0.61 |
| 07 | 7efi_A_G7_A8 | OPN | OP10 | 70 | 0.14 |
| 08 | 7efi_A_A8_A9 | AAA | AA08 | 66 | 0.28 |
| 09 | 7efi_A_A9_C10 | AAA | AA08 | 9 | 0.63 |
| 10 | 7efi_A_C10_C11 | AAA | AA03 | 62 | 0.26 |
| 11 | 7efi_A_C11_OMG12 | AAA | AA00 | 76 | 0.11 |
| 12 | 7efi_A_OMG12_OMG13 | AAA | AA00 | 69 | 0.22 |
| 13 | 7efi_A_OMG13_OMG14 | AAA | AA04 | 81 | 0.34 |
| 14 | 7efi_A_OMG14_DG15 | NAN | NANT | 0 | 0.46 |
| 15 | 7efi_A_DG15_DA16 | OPN | OP22 | 34 | 0.68 |
| 16 | 7efi_A_DA16_G17 | OPN | OP24 | 80 | 0.33 |
| 17 | 7efi_A_G17_OMC18 | AAA | AA08 | 75 | 0.24 |
| 18 | 7efi_A_OMC18_OMC19 | AAA | AA00 | 56 | 0.30 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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