Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
RNA kink-turn motif
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 18 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 7efh_A_G1_G2 | AAA | AA00 | 61 | 0.22 |
| 02 | 7efh_A_G2_C3 | AAA | AA00 | 81 | 0.25 |
| 03 | 7efh_A_C3_G4 | AAA | AA00 | 49 | 0.36 |
| 04 | 7efh_A_G4_A5 | NAN | NANT | 0 | 1.01 |
| 05 | 7efh_A_A5_A6 | NAN | NANT | 0 | 0.48 |
| 06 | 7efh_A_A6_G7 | NAN | NANT | 0 | 0.79 |
| 07 | 7efh_A_G7_A8 | OPN | OP10 | 72 | 0.21 |
| 08 | 7efh_A_A8_A9 | AAA | AA08 | 64 | 0.29 |
| 09 | 7efh_A_A9_C10 | AAA | AA08 | 44 | 0.58 |
| 10 | 7efh_A_C10_C11 | AAA | AA03 | 85 | 0.22 |
| 11 | 7efh_A_C11_G12 | AAA | AA03 | 76 | 0.15 |
| 12 | 7efh_A_G12_G13 | AAA | AA00 | 75 | 0.16 |
| 13 | 7efh_A_G13_G14 | AAA | AA00 | 12 | 0.47 |
| 14 | 7efh_A_G14_G15 | A-B | AB05 | 54 | 0.40 |
| 15 | 7efh_A_G15_A16 | NAN | NANT | 0 | 0.91 |
| 16 | 7efh_A_A16_G17 | NAN | NANT | 0 | 0.77 |
| 17 | 7efh_A_G17_C18 | AAA | AA08 | 61 | 0.29 |
| 18 | 7efh_A_C18_C19 | AAA | AA00 | 78 | 0.20 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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