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Conformers: ABBIImiBZICOPNSYNN
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RNA duplex containing C-Au-C base pair

Results of the assignment of 44 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
017edu_A_G1_G2AAAAA08820.20 AA08
027edu_A_G2_A3AAAAA00880.11 AA00
037edu_A_A3_C4AAAAA00750.22 AA00
047edu_A_C4_U5AAAAA08660.31 AA08
057edu_A_U5_C6AAAAA00580.20 AA00
067edu_A_C6_G7AAAAA00700.20 AA00
077edu_A_G7_A8AAAAA00660.22 AA00
087edu_A_A8_C9AAAAA00820.14 AA00
097edu_A_C9_U10AAAAA08830.18 AA08
107edu_A_U10_C11AAAAA08640.22 AA08
117edu_A_C11_C12AAAAA00840.17 AA00
127edu_B_G1_G2AAAAA08800.19 AA08
137edu_B_G2_A3AAAAA00870.10 AA00
147edu_B_A3_C4AAAAA00900.15 AA00
157edu_B_C4_U5AAAAA08770.28 AA08
167edu_B_U5_C6AAAAA00740.19 AA00
177edu_B_C6_G7AAAAA00740.14 AA00
187edu_B_G7_A8AAAAA08850.13 AA08
197edu_B_A8_C9AAAAA00720.15 AA00
207edu_B_C9_U10AAAAA00550.23 AA00
217edu_B_U10_C11AAAAA08750.28 AA08
227edu_B_C11_C12AAAAA00910.17 AA00
237edu_C_G1_G2AAAAA00860.14 AA00
247edu_C_G2_A3AAAAA00630.23 AA00
257edu_C_A3_C4AAAAA00660.12 AA00
267edu_C_C4_U5AAAAA00770.17 AA00
277edu_C_U5_C6AAAAA08850.13 AA08
287edu_C_C6_G7AAAAA00810.16 AA00
297edu_C_G7_A8AAAAA00920.12 AA00
307edu_C_A8_C9AAAAA00900.16 AA00
317edu_C_C9_U10AAAAA08800.22 AA08
327edu_C_U10_C11AAwAA01870.15 AA01
337edu_C_C11_C12AAAAA00880.19 AA00
347edu_D_G1_G2AAAAA00900.19 AA00
357edu_D_G2_A3AAAAA00720.22 AA00
367edu_D_A3_C4AAAAA00810.16 AA00
377edu_D_C4_U5AAAAA08800.26 AA08
387edu_D_U5_C6AAAAA08830.15 AA08
397edu_D_C6_G7AAAAA00560.17 AA00
407edu_D_G7_A8AAAAA00670.13 AA00
417edu_D_A8_C9AAAAA00870.16 AA00
427edu_D_C9_U10AAAAA08880.22 AA08
437edu_D_U10_C11AAAAA00730.13 AA00
447edu_D_C11_C12AAAAA00650.19 AA00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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