Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
RNA duplex containing CC mispairs
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 22 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 7edt_A_G1_G2 | AAA | AA00 | 43 | 0.28 |
| 02 | 7edt_A_G2_A3 | AAw | AA01 | 96 | 0.12 |
| 03 | 7edt_A_A3_C4 | AAA | AA00 | 84 | 0.18 |
| 04 | 7edt_A_C4_U5 | AAA | AA00 | 90 | 0.23 |
| 05 | 7edt_A_U5_C6 | NAN | NANT | 0 | 0.56 |
| 06 | 7edt_A_C6_C7 | NAN | NANT | 0 | 0.67 |
| 07 | 7edt_A_C7_G8 | NAN | NANT | 0 | 0.73 |
| 08 | 7edt_A_G8_G9 | AAA | AA00 | 82 | 0.22 |
| 09 | 7edt_A_G9_5BU10 | AAA | AA00 | 88 | 0.13 |
| 10 | 7edt_A_5BU10_C11 | AAA | AA00 | 91 | 0.10 |
| 11 | 7edt_A_C11_C12 | AAA | AA00 | 90 | 0.20 |
| 12 | 7edt_B_G13_G14 | AAA | AA00 | 60 | 0.23 |
| 13 | 7edt_B_G14_A15 | AAA | AA00 | 98 | 0.05 |
| 14 | 7edt_B_A15_C16 | AAA | AA00 | 79 | 0.14 |
| 15 | 7edt_B_C16_U17 | AAA | AA00 | 89 | 0.19 |
| 16 | 7edt_B_U17_C18 | AAA | AA00 | 91 | 0.11 |
| 17 | 7edt_B_C18_C19 | OPN | OP07 | 44 | 0.40 |
| 18 | 7edt_B_C19_G20 | NAN | NANT | 0 | 0.81 |
| 19 | 7edt_B_G20_G21 | AAA | AA00 | 73 | 0.25 |
| 20 | 7edt_B_G21_5BU22 | AAA | AA00 | 76 | 0.19 |
| 21 | 7edt_B_5BU22_C23 | AAA | AA00 | 92 | 0.12 |
| 22 | 7edt_B_C23_C24 | AAA | AA00 | 96 | 0.12 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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