Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
NMR solution structures of DNA minidumbbell containing a N1-methyladenine
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 35 detected steps in 5 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 7e4e-m1_A_DT1_DT2 | NAN | NANT | 0 | 0.95 |
| 02 | 7e4e-m2_A_DT1_DT2 | NAN | NANT | 0 | 0.94 |
| 03 | 7e4e-m3_A_DT1_DT2 | NAN | NANT | 0 | 0.96 |
| 04 | 7e4e-m4_A_DT1_DT2 | NAN | NANT | 0 | 1.05 |
| 05 | 7e4e-m5_A_DT1_DT2 | NAN | NANT | 0 | 1.01 |
| 06 | 7e4e-m1_A_DT2_DT3 | NAN | NANT | 0 | 0.87 |
| 07 | 7e4e-m2_A_DT2_DT3 | NAN | NANT | 0 | 0.94 |
| 08 | 7e4e-m3_A_DT2_DT3 | NAN | NANT | 0 | 0.94 |
| 09 | 7e4e-m4_A_DT2_DT3 | NAN | NANT | 0 | 0.86 |
| 10 | 7e4e-m5_A_DT2_DT3 | NAN | NANT | 0 | 0.93 |
| 11 | 7e4e-m1_A_DT3_MA74 | NAN | NANT | 0 | 1.52 |
| 12 | 7e4e-m2_A_DT3_MA74 | NAN | NANT | 0 | 1.54 |
| 13 | 7e4e-m3_A_DT3_MA74 | NAN | NANT | 0 | 1.51 |
| 14 | 7e4e-m4_A_DT3_MA74 | NAN | NANT | 0 | 0.49 |
| 15 | 7e4e-m5_A_DT3_MA74 | NAN | NANT | 0 | 1.92 |
| 16 | 7e4e-m1_A_MA74_DT5 | NAN | NANT | 0 | 0.75 |
| 17 | 7e4e-m2_A_MA74_DT5 | NAN | NANT | 0 | 0.75 |
| 18 | 7e4e-m3_A_MA74_DT5 | NAN | NANT | 0 | 0.76 |
| 19 | 7e4e-m4_A_MA74_DT5 | NAN | NANT | 0 | 0.75 |
| 20 | 7e4e-m5_A_MA74_DT5 | NAN | NANT | 0 | 0.72 |
| 21 | 7e4e-m1_A_DT5_DT6 | NAN | NANT | 0 | 1.60 |
| 22 | 7e4e-m2_A_DT5_DT6 | NAN | NANT | 0 | 1.53 |
| 23 | 7e4e-m3_A_DT5_DT6 | NAN | NANT | 0 | 1.50 |
| 24 | 7e4e-m4_A_DT5_DT6 | NAN | NANT | 0 | 1.49 |
| 25 | 7e4e-m5_A_DT5_DT6 | NAN | NANT | 0 | 1.50 |
| 26 | 7e4e-m1_A_DT6_DT7 | NAN | NANT | 0 | 1.15 |
| 27 | 7e4e-m2_A_DT6_DT7 | NAN | NANT | 0 | 1.15 |
| 28 | 7e4e-m3_A_DT6_DT7 | NAN | NANT | 0 | 1.08 |
| 29 | 7e4e-m4_A_DT6_DT7 | NAN | NANT | 0 | 1.16 |
| 30 | 7e4e-m5_A_DT6_DT7 | NAN | NANT | 0 | 1.19 |
| 31 | 7e4e-m1_A_DT7_DA8 | NAN | NANT | 0 | 1.40 |
| 32 | 7e4e-m2_A_DT7_DA8 | NAN | NANT | 0 | 1.39 |
| 33 | 7e4e-m3_A_DT7_DA8 | NAN | NANT | 0 | 1.38 |
| 34 | 7e4e-m4_A_DT7_DA8 | NAN | NANT | 0 | 1.40 |
| 35 | 7e4e-m5_A_DT7_DA8 | NAN | NANT | 0 | 1.41 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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