Conformers:
ABBIImiBZICOPNSYNN
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HIV-1 reverse transcriptase mutant Q151M/Y115F/F116Y/M184V/F160M:DNA:dCTP ternary complex
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 71 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 7dbn_E_DT-1_DG0 | OPN | OP11 | 67 | 0.42 |
| 02 | 7dbn_E_DG0_DC1 | AAA | AA00 | 53 | 0.23 |
| 03 | 7dbn_E_DC1_OMC2 | AAA | AA08 | 88 | 0.21 |
| 04 | 7dbn_E_OMC2_DC3 | AAA | AA00 | 63 | 0.22 |
| 05 | 7dbn_E_DC3_OMC4 | AAA | AA00 | 88 | 0.16 |
| 06 | 7dbn_E_OMC4_DC5 | AAA | AA00 | 95 | 0.17 |
| 07 | 7dbn_E_DC5_DC6 | A-B | AB05 | 73 | 0.21 |
| 08 | 7dbn_E_DC6_DC7 | BBB | BB00 | 71 | 0.34 |
| 09 | 7dbn_E_DC7_DT8 | BBB | BB00 | 85 | 0.18 |
| 10 | 7dbn_E_DT8_DT9 | BBB | BB00 | 92 | 0.11 |
| 11 | 7dbn_E_DT9_DC10 | BBB | BB00 | 34 | 0.15 |
| 12 | 7dbn_E_DC10_DG11 | B12 | BB04 | 56 | 0.30 |
| 13 | 7dbn_E_DG11_DG12 | B12 | BB04 | 82 | 0.15 |
| 14 | 7dbn_E_DG12_DT13 | BBB | BB00 | 81 | 0.24 |
| 15 | 7dbn_E_DT13_DG14 | miB | BB15 | 19 | 0.35 |
| 16 | 7dbn_E_DG14_DC15 | B12 | BB04 | 66 | 0.18 |
| 17 | 7dbn_E_DC15_DT16 | NAN | NANT | 0 | 0.61 |
| 18 | 7dbn_E_DT16_DT17 | NAN | NANT | 0 | 0.94 |
| 19 | 7dbn_E_DT17_DT18 | NAN | NANT | 0 | 0.70 |
| 20 | 7dbn_E_DT18_DG19 | NAN | NANT | 0 | 1.18 |
| 21 | 7dbn_E_DG19_DC20 | B-A | BA05 | 47 | 0.27 |
| 22 | 7dbn_E_DC20_DA21 | A-B | AB03 | 84 | 0.16 |
| 23 | 7dbn_E_DA21_DC22 | BBB | BB00 | 17 | 0.24 |
| 24 | 7dbn_E_DC22_DC23 | A-B | AB03 | 84 | 0.27 |
| 25 | 7dbn_E_DC23_DG24 | B12 | BB04 | 59 | 0.14 |
| 26 | 7dbn_E_DG24_DA25 | BBB | BB00 | 98 | 0.14 |
| 27 | 7dbn_E_DA25_DA26 | BBB | BB00 | 93 | 0.10 |
| 28 | 7dbn_E_DA26_DG27 | B-A | BA08 | 36 | 0.30 |
| 29 | 7dbn_E_DG27_DG28 | AAA | AA00 | 91 | 0.21 |
| 30 | 7dbn_E_DG28_DG29 | AAA | AA00 | 81 | 0.14 |
| 31 | 7dbn_E_DG29_DG30 | AAA | AA00 | 85 | 0.17 |
| 32 | 7dbn_E_DG30_DG31 | AAA | AA00 | 76 | 0.22 |
| 33 | 7dbn_E_DG31_DG32 | AAA | AA00 | 78 | 0.23 |
| 34 | 7dbn_E_DG32_DG33 | AAA | AA00 | 85 | 0.17 |
| 35 | 7dbn_F_DT-4_DA-3 | NAN | NANT | 0 | 0.93 |
| 36 | 7dbn_F_DA-3_DA-2 | BBB | BB00 | 76 | 0.22 |
| 37 | 7dbn_F_DA-2_DT-1 | miB | BB12 | 65 | 0.30 |
| 38 | 7dbn_F_DT-1_DG0 | NAN | NANT | 0 | 0.39 |
| 39 | 7dbn_F_DG0_DC1 | AAA | AA00 | 39 | 0.23 |
| 40 | 7dbn_F_DC1_OMC2 | AAA | AA00 | 87 | 0.18 |
| 41 | 7dbn_F_OMC2_DC3 | AAA | AA00 | 83 | 0.17 |
| 42 | 7dbn_F_DC3_OMC4 | AAA | AA08 | 81 | 0.24 |
| 43 | 7dbn_F_OMC4_DC5 | AAA | AA04 | 87 | 0.21 |
| 44 | 7dbn_F_DC5_DC6 | A-B | AB05 | 60 | 0.20 |
| 45 | 7dbn_F_DC6_DC7 | BBB | BB00 | 61 | 0.35 |
| 46 | 7dbn_F_DC7_DT8 | BBB | BB00 | 88 | 0.18 |
| 47 | 7dbn_F_DT8_DT9 | BBB | BB00 | 91 | 0.12 |
| 48 | 7dbn_F_DT9_DC10 | BBB | BB00 | 58 | 0.15 |
| 49 | 7dbn_F_DC10_DG11 | B12 | BB04 | 92 | 0.23 |
| 50 | 7dbn_F_DG11_DG12 | B12 | BB04 | 72 | 0.14 |
| 51 | 7dbn_F_DG12_DT13 | BBB | BB00 | 70 | 0.24 |
| 52 | 7dbn_F_DT13_DG14 | BBB | BB00 | 89 | 0.19 |
| 53 | 7dbn_F_DG14_DC15 | NAN | NANT | 0 | 0.60 |
| 54 | 7dbn_F_DC15_DT16 | NAN | NANT | 0 | 1.06 |
| 55 | 7dbn_F_DT16_DT17 | NAN | NANT | 0 | 0.94 |
| 56 | 7dbn_F_DT17_DT18 | NAN | NANT | 0 | 2.40 |
| 57 | 7dbn_F_DT18_DG19 | NAN | NANT | 0 | 2.16 |
| 58 | 7dbn_F_DG19_DC20 | B-A | BA08 | 56 | 0.48 |
| 59 | 7dbn_F_DC20_DA21 | A-B | AB03 | 84 | 0.17 |
| 60 | 7dbn_F_DA21_DC22 | BBB | BB01 | 74 | 0.20 |
| 61 | 7dbn_F_DC22_DC23 | miB | BB15 | 72 | 0.27 |
| 62 | 7dbn_F_DC23_DG24 | B12 | BB04 | 33 | 0.16 |
| 63 | 7dbn_F_DG24_DA25 | BBB | BB00 | 74 | 0.22 |
| 64 | 7dbn_F_DA25_DA26 | BBB | BB00 | 94 | 0.09 |
| 65 | 7dbn_F_DA26_DG27 | B-A | BA08 | 53 | 0.25 |
| 66 | 7dbn_F_DG27_DG28 | AAA | AA00 | 85 | 0.20 |
| 67 | 7dbn_F_DG28_DG29 | AAA | AA00 | 85 | 0.14 |
| 68 | 7dbn_F_DG29_DG30 | AAA | AA00 | 94 | 0.15 |
| 69 | 7dbn_F_DG30_DG31 | AAA | AA00 | 79 | 0.18 |
| 70 | 7dbn_F_DG31_DG32 | AAA | AA00 | 88 | 0.20 |
| 71 | 7dbn_F_DG32_DG33 | AAA | AA00 | 80 | 0.21 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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| Color by conformation group (pyramids) | |
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