Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
Crystal structure of full-length CbnR complexed with the target DNA complex
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 53 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 7d98_G_DT4_DA5 | BBw | BB16 | 17 | 0.72 |
| 02 | 7d98_G_DA5_DT6 | B-A | BA09 | 14 | 0.45 |
| 03 | 7d98_G_DT6_DT7 | NAN | NANT | 0 | 0.41 |
| 04 | 7d98_G_DT7_DA8 | A-B | AB05 | 53 | 0.29 |
| 05 | 7d98_G_DA8_DC9 | NAN | NANT | 0 | 0.42 |
| 06 | 7d98_G_DC9_DG10 | A-B | AB03 | 33 | 0.47 |
| 07 | 7d98_G_DG10_DC11 | miB | BB10 | 56 | 0.29 |
| 08 | 7d98_G_DC11_DA12 | B12 | BB04 | 31 | 0.30 |
| 09 | 7d98_G_DA12_DA13 | B-A | BA08 | 49 | 0.37 |
| 10 | 7d98_G_DA13_DA14 | BBB | BB00 | 13 | 0.26 |
| 11 | 7d98_G_DA14_DC15 | BBB | BB00 | 55 | 0.32 |
| 12 | 7d98_G_DC15_DC16 | B12 | BB04 | 16 | 0.37 |
| 13 | 7d98_G_DC16_DG17 | NAN | NANT | 0 | 0.51 |
| 14 | 7d98_G_DT37_DG38 | BBB | BB00 | 29 | 0.45 |
| 15 | 7d98_G_DG38_DG39 | BBw | BB03 | 22 | 0.40 |
| 16 | 7d98_G_DG39_DT40 | NAN | NANT | 0 | 0.45 |
| 17 | 7d98_G_DT40_DA41 | BBB | BB00 | 60 | 0.28 |
| 18 | 7d98_G_DA41_DT42 | BBB | BB00 | 78 | 0.24 |
| 19 | 7d98_G_DT42_DT43 | B12 | BB04 | 88 | 0.25 |
| 20 | 7d98_G_DT43_DG44 | B12 | BB04 | 25 | 0.19 |
| 21 | 7d98_G_DG44_DG45 | B-A | BA05 | 36 | 0.36 |
| 22 | 7d98_G_DG45_DA46 | BBB | BB00 | 38 | 0.29 |
| 23 | 7d98_G_DA46_DC47 | miB | BB15 | 17 | 0.37 |
| 24 | 7d98_G_DC47_DG48 | B12 | BB04 | 45 | 0.32 |
| 25 | 7d98_G_DG48_DG49 | B12 | BB04 | 32 | 0.48 |
| 26 | 7d98_G_DG49_DC50 | B12 | BB04 | 58 | 0.22 |
| 27 | 7d98_G_DC50_DA51 | B-A | BA05 | 43 | 0.18 |
| 28 | 7d98_G_DA51_DT52 | BBB | BB01 | 14 | 0.23 |
| 29 | 7d98_G_DT52_DG53 | BBB | BB01 | 25 | 0.23 |
| 30 | 7d98_G_DG53_DG54 | BBB | BB00 | 60 | 0.23 |
| 31 | 7d98_G_DG54_DC55 | NAN | NANT | 0 | 0.56 |
| 32 | 7d98_H_DT0_DG1 | miB | BB13 | 46 | 0.44 |
| 33 | 7d98_H_DG1_DC2 | BBB | BB01 | 15 | 0.60 |
| 34 | 7d98_H_DC2_DC3 | BBB | BB01 | 65 | 0.21 |
| 35 | 7d98_H_DC3_DA4 | NAN | NANT | 0 | 0.53 |
| 36 | 7d98_H_DA4_DT5 | BBw | BB16 | 43 | 0.69 |
| 37 | 7d98_H_DT5_DG6 | BBw | BB02 | 66 | 0.27 |
| 38 | 7d98_H_DG6_DC7 | BBB | BB00 | 38 | 0.29 |
| 39 | 7d98_H_DC7_DC8 | BBB | BB01 | 63 | 0.27 |
| 40 | 7d98_H_DC8_DG9 | BBB | BB00 | 57 | 0.41 |
| 41 | 7d98_H_DG9_DT10 | BBB | BB00 | 81 | 0.20 |
| 42 | 7d98_H_DT10_DC11 | BBB | BB00 | 74 | 0.18 |
| 43 | 7d98_H_DC11_DC12 | BBB | BB00 | 55 | 0.35 |
| 44 | 7d98_H_DC12_DA13 | BBB | BB00 | 47 | 0.27 |
| 45 | 7d98_H_DA13_DA14 | B12 | BB04 | 78 | 0.18 |
| 46 | 7d98_H_DA14_DT15 | B12 | BB04 | 57 | 0.36 |
| 47 | 7d98_H_DT15_DA16 | BBB | BB01 | 73 | 0.18 |
| 48 | 7d98_H_DT44_DG45 | NAN | NANT | 0 | 0.24 |
| 49 | 7d98_H_DG45_DC46 | B-A | BA08 | 53 | 0.38 |
| 50 | 7d98_H_DC46_DG47 | A-B | AB05 | 54 | 0.34 |
| 51 | 7d98_H_DG47_DT48 | BBB | BB00 | 86 | 0.22 |
| 52 | 7d98_H_DT48_DA49 | BBB | BB00 | 81 | 0.18 |
| 53 | 7d98_H_DA49_DA50 | BBB | BB00 | 68 | 0.33 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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