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Conformers: ABBIImiBZICOPNSYNN
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Left-handed G-quadruplex containing 3 bulges

Results of the assignment of 260 detected steps in 10 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
0017d5f-m10_A_DG1_DG2NANNANT01.17 BB07
0027d5f-m1_A_DG1_DG2NANNANT01.01 BB14
0037d5f-m2_A_DG1_DG2NANNANT01.13 BB07
0047d5f-m3_A_DG1_DG2NANNANT00.88 BB20
0057d5f-m4_A_DG1_DG2NANNANT00.82 BB20
0067d5f-m5_A_DG1_DG2NANNANT01.16 BB07
0077d5f-m6_A_DG1_DG2NANNANT00.85 BB20
0087d5f-m7_A_DG1_DG2NANNANT00.82 BB20
0097d5f-m8_A_DG1_DG2NANNANT00.90 BB20
0107d5f-m9_A_DG1_DG2NANNANT00.93 BB20
0117d5f-m10_A_DG2_DT3NANNANT01.67 OP24
0127d5f-m1_A_DG2_DT3NANNANT00.60 IC06
0137d5f-m2_A_DG2_DT3NANNANT00.62 IC06
0147d5f-m3_A_DG2_DT3NANNANT01.62 OP24
0157d5f-m4_A_DG2_DT3ICLIC06160.49 IC06
0167d5f-m5_A_DG2_DT3NANNANT00.59 IC06
0177d5f-m6_A_DG2_DT3BBwBB1690.78 BB16
0187d5f-m7_A_DG2_DT3NANNANT00.73 BB16
0197d5f-m8_A_DG2_DT3NANNANT01.64 OP24
0207d5f-m9_A_DG2_DT3NANNANT01.23 AB02
0217d5f-m10_A_DT3_DG4NANNANT01.03 BB20
0227d5f-m1_A_DT3_DG4NANNANT01.02 BB20
0237d5f-m2_A_DT3_DG4NANNANT01.11 BB20
0247d5f-m3_A_DT3_DG4NANNANT01.09 BA16
0257d5f-m4_A_DT3_DG4NANNANT00.89 BB20
0267d5f-m5_A_DT3_DG4NANNANT01.06 BB20
0277d5f-m6_A_DT3_DG4NANNANT01.10 BB20
0287d5f-m7_A_DT3_DG4NANNANT01.04 BB20
0297d5f-m8_A_DT3_DG4NANNANT01.31 OP22
0307d5f-m9_A_DT3_DG4NANNANT01.73 BB10
0317d5f-m10_A_DG4_DT5NANNANT02.39 OP1S
0327d5f-m1_A_DG4_DT5NANNANT01.98 OP20
0337d5f-m2_A_DG4_DT5NANNANT01.77 OP31
0347d5f-m3_A_DG4_DT5NANNANT01.62 OP21
0357d5f-m4_A_DG4_DT5NANNANT01.33 OP21
0367d5f-m5_A_DG4_DT5NANNANT01.95 OP20
0377d5f-m6_A_DG4_DT5NANNANT02.13 OP17
0387d5f-m7_A_DG4_DT5NANNANT01.71 OP30
0397d5f-m8_A_DG4_DT5NANNANT02.62 IC03
0407d5f-m9_A_DG4_DT5NANNANT01.90 OP17
0417d5f-m10_A_DT5_DG6NANNANT01.41 OP25
0427d5f-m1_A_DT5_DG6NANNANT01.53 OP13
0437d5f-m2_A_DT5_DG6NANNANT01.36 OP25
0447d5f-m3_A_DT5_DG6NANNANT00.84 OP30
0457d5f-m4_A_DT5_DG6NANNANT02.19 OP19
0467d5f-m5_A_DT5_DG6NANNANT01.91 OP28
0477d5f-m6_A_DT5_DG6NANNANT00.95 OP21
0487d5f-m7_A_DT5_DG6NANNANT01.33 OP21
0497d5f-m8_A_DT5_DG6NANNANT01.55 OP20
0507d5f-m9_A_DT5_DG6NANNANT02.00 OP06
0517d5f-m10_A_DG6_DT7NANNANT00.71 IC04
0527d5f-m1_A_DG6_DT7NANNANT01.70 OP24
0537d5f-m2_A_DG6_DT7NANNANT00.57 IC06
0547d5f-m3_A_DG6_DT7NANNANT00.58 IC06
0557d5f-m4_A_DG6_DT7NANNANT01.02 AB02
0567d5f-m5_A_DG6_DT7NANNANT01.65 OP24
0577d5f-m6_A_DG6_DT7NANNANT00.55 IC04
0587d5f-m7_A_DG6_DT7NANNANT00.57 IC06
0597d5f-m8_A_DG6_DT7NANNANT00.68 IC06
0607d5f-m9_A_DG6_DT7NANNANT01.67 OP24
0617d5f-m10_A_DT7_DG8NANNANT01.17 BB20
0627d5f-m1_A_DT7_DG8NANNANT01.22 BB14
0637d5f-m2_A_DT7_DG8NANNANT01.26 BB14
0647d5f-m3_A_DT7_DG8NANNANT01.13 BB08
0657d5f-m4_A_DT7_DG8NANNANT01.32 BB08
0667d5f-m5_A_DT7_DG8NANNANT01.18 OP22
0677d5f-m6_A_DT7_DG8NANNANT01.15 BB20
0687d5f-m7_A_DT7_DG8NANNANT01.24 BB14
0697d5f-m8_A_DT7_DG8NANNANT00.46 OP26
0707d5f-m9_A_DT7_DG8NANNANT00.40 OP26
0717d5f-m10_A_DG8_DT9NANNANT01.18 OP16
0727d5f-m1_A_DG8_DT9NANNANT01.07 OP21
0737d5f-m2_A_DG8_DT9NANNANT01.20 OP21
0747d5f-m3_A_DG8_DT9NANNANT01.68 OP17
0757d5f-m4_A_DG8_DT9NANNANT01.95 ZZ2S
0767d5f-m5_A_DG8_DT9NANNANT01.27 OP21
0777d5f-m6_A_DG8_DT9NANNANT01.25 OP21
0787d5f-m7_A_DG8_DT9NANNANT01.92 OP31
0797d5f-m8_A_DG8_DT9NANNANT01.36 OP21
0807d5f-m9_A_DG8_DT9NANNANT01.12 OP21
0817d5f-m10_A_DT9_DG10NANNANT01.40 OP21
0827d5f-m1_A_DT9_DG10NANNANT02.07 OP10
0837d5f-m2_A_DT9_DG10NANNANT01.08 OP21
0847d5f-m3_A_DT9_DG10NANNANT01.49 OP21
0857d5f-m4_A_DT9_DG10NANNANT02.13 OP15
0867d5f-m5_A_DT9_DG10NANNANT01.04 OP21
0877d5f-m6_A_DT9_DG10NANNANT01.84 OP17
0887d5f-m7_A_DT9_DG10NANNANT01.29 OP21
0897d5f-m8_A_DT9_DG10NANNANT01.35 OP21
0907d5f-m9_A_DT9_DG10NANNANT01.48 OP31
0917d5f-m10_A_DG10_DT11NANNANT00.44 IC06
0927d5f-m1_A_DG10_DT11NANNANT01.67 OP24
0937d5f-m2_A_DG10_DT11NANNANT00.63 IC06
0947d5f-m3_A_DG10_DT11NANNANT00.63 IC06
0957d5f-m4_A_DG10_DT11NANNANT01.03 AB02
0967d5f-m5_A_DG10_DT11NANNANT01.69 OP24
0977d5f-m6_A_DG10_DT11NANNANT00.42 IC06
0987d5f-m7_A_DG10_DT11NANNANT00.65 IC06
0997d5f-m8_A_DG10_DT11NANNANT01.68 OP24
1007d5f-m9_A_DG10_DT11NANNANT01.75 OP24
1017d5f-m10_A_DT11_DG12NANNANT00.89 BB20
1027d5f-m1_A_DT11_DG12NANNANT01.04 BA16
1037d5f-m2_A_DT11_DG12NANNANT00.98 BB20
1047d5f-m3_A_DT11_DG12NANNANT01.58 BB10
1057d5f-m4_A_DT11_DG12NANNANT01.08 BB20
1067d5f-m5_A_DT11_DG12NANNANT01.18 BA16
1077d5f-m6_A_DT11_DG12NANNANT00.87 BB20
1087d5f-m7_A_DT11_DG12NANNANT01.13 BB08
1097d5f-m8_A_DT11_DG12NANNANT00.58 OP26
1107d5f-m9_A_DT11_DG12NANNANT00.41 OP26
1117d5f-m10_A_DG12_DT13NANNANT00.94 OP18
1127d5f-m1_A_DG12_DT13NANNANT01.71 OP09
1137d5f-m2_A_DG12_DT13NANNANT01.78 OP17
1147d5f-m3_A_DG12_DT13NANNANT01.46 OP21
1157d5f-m4_A_DG12_DT13NANNANT01.85 OP31
1167d5f-m5_A_DG12_DT13NANNANT01.42 OP21
1177d5f-m6_A_DG12_DT13NANNANT02.07 OP28
1187d5f-m7_A_DG12_DT13NANNANT01.14 OP18
1197d5f-m8_A_DG12_DT13NANNANT02.63 BB1S
1207d5f-m9_A_DG12_DT13NANNANT01.59 OP23
1217d5f-m10_A_DT13_DG14NANNANT00.51 OP21
1227d5f-m1_A_DT13_DG14NANNANT00.86 OP21
1237d5f-m2_A_DT13_DG14NANNANT01.94 IC02
1247d5f-m3_A_DT13_DG14NANNANT01.14 OP21
1257d5f-m4_A_DT13_DG14NANNANT02.07 OP06
1267d5f-m5_A_DT13_DG14NANNANT01.90 OP13
1277d5f-m6_A_DT13_DG14NANNANT00.89 OP30
1287d5f-m7_A_DT13_DG14NANNANT00.90 OP30
1297d5f-m8_A_DT13_DG14NANNANT01.05 OP31
1307d5f-m9_A_DT13_DG14NANNANT01.16 OP18
1317d5f-m10_A_DG14_DT15NANNANT01.43 OP13
1327d5f-m1_A_DG14_DT15NANNANT01.65 OP17
1337d5f-m2_A_DG14_DT15NANNANT01.13 OP30
1347d5f-m3_A_DG14_DT15NANNANT01.19 OP30
1357d5f-m4_A_DG14_DT15NANNANT01.38 OP21
1367d5f-m5_A_DG14_DT15NANNANT01.15 OP13
1377d5f-m6_A_DG14_DT15NANNANT01.66 OP17
1387d5f-m7_A_DG14_DT15NANNANT01.50 OP16
1397d5f-m8_A_DG14_DT15NANNANT01.80 OP06
1407d5f-m9_A_DG14_DT15NANNANT01.87 OP06
1417d5f-m10_A_DT15_DG16NANNANT01.95 OP21
1427d5f-m1_A_DT15_DG16NANNANT01.80 OP21
1437d5f-m2_A_DT15_DG16NANNANT02.39 IC03
1447d5f-m3_A_DT15_DG16NANNANT01.76 OP21
1457d5f-m4_A_DT15_DG16NANNANT01.57 OP21
1467d5f-m5_A_DT15_DG16NANNANT01.87 OPS1
1477d5f-m6_A_DT15_DG16NANNANT01.50 OP21
1487d5f-m7_A_DT15_DG16NANNANT02.21 OPS1
1497d5f-m8_A_DT15_DG16NANNANT01.98 OP21
1507d5f-m9_A_DT15_DG16NANNANT01.62 OP06
1517d5f-m10_A_DG16_DT17NANNANT01.07 AB02
1527d5f-m1_A_DG16_DT17NANNANT00.69 IC06
1537d5f-m2_A_DG16_DT17NANNANT00.53 IC06
1547d5f-m3_A_DG16_DT17NANNANT00.67 IC06
1557d5f-m4_A_DG16_DT17NANNANT00.54 IC06
1567d5f-m5_A_DG16_DT17NANNANT01.36 BB10
1577d5f-m6_A_DG16_DT17NANNANT00.68 IC06
1587d5f-m7_A_DG16_DT17NANNANT01.67 OP24
1597d5f-m8_A_DG16_DT17NANNANT01.63 OP24
1607d5f-m9_A_DG16_DT17NANNANT00.66 IC06
1617d5f-m10_A_DT17_DG18NANNANT01.57 OP19
1627d5f-m1_A_DT17_DG18NANNANT01.10 BB20
1637d5f-m2_A_DT17_DG18NANNANT01.06 OP22
1647d5f-m3_A_DT17_DG18NANNANT00.98 ZZ02
1657d5f-m4_A_DT17_DG18NANNANT00.99 ZZ02
1667d5f-m5_A_DT17_DG18NANNANT01.61 BB17
1677d5f-m6_A_DT17_DG18NANNANT00.98 ZZ02
1687d5f-m7_A_DT17_DG18NANNANT01.04 ZZ02
1697d5f-m8_A_DT17_DG18NANNANT01.09 ZZ02
1707d5f-m9_A_DT17_DG18NANNANT00.98 ZZ02
1717d5f-m10_A_DG18_DG19NANNANT01.03 BB20
1727d5f-m1_A_DG18_DG19NANNANT00.84 BB20
1737d5f-m2_A_DG18_DG19NANNANT01.07 BB07
1747d5f-m3_A_DG18_DG19NANNANT00.79 BB20
1757d5f-m4_A_DG18_DG19NANNANT01.13 BB07
1767d5f-m5_A_DG18_DG19NANNANT00.80 BB20
1777d5f-m6_A_DG18_DG19NANNANT00.86 BB20
1787d5f-m7_A_DG18_DG19NANNANT00.91 BB20
1797d5f-m8_A_DG18_DG19NANNANT00.88 BB20
1807d5f-m9_A_DG18_DG19NANNANT01.12 BB07
1817d5f-m10_A_DG19_DT20NANNANT00.68 IC06
1827d5f-m1_A_DG19_DT20NANNANT00.87 BB16
1837d5f-m2_A_DG19_DT20NANNANT00.74 IC06
1847d5f-m3_A_DG19_DT20NANNANT00.86 BB16
1857d5f-m4_A_DG19_DT20NANNANT00.95 BB03
1867d5f-m5_A_DG19_DT20NANNANT00.52 IC06
1877d5f-m6_A_DG19_DT20NANNANT00.88 BB16
1887d5f-m7_A_DG19_DT20NANNANT01.12 AB02
1897d5f-m8_A_DG19_DT20NANNANT00.77 IC06
1907d5f-m9_A_DG19_DT20NANNANT00.86 BB16
1917d5f-m10_A_DT20_DG21NANNANT01.56 BB10
1927d5f-m1_A_DT20_DG21NANNANT01.03 ZZ02
1937d5f-m2_A_DT20_DG21NANNANT01.40 BB10
1947d5f-m3_A_DT20_DG21NANNANT01.04 ZZ02
1957d5f-m4_A_DT20_DG21NANNANT00.41 OP26
1967d5f-m5_A_DT20_DG21NANNANT01.30 BB14
1977d5f-m6_A_DT20_DG21NANNANT00.99 ZZ02
1987d5f-m7_A_DT20_DG21NANNANT01.34 BB14
1997d5f-m8_A_DT20_DG21NANNANT01.59 BB10
2007d5f-m9_A_DT20_DG21NANNANT01.22 BB20
2017d5f-m10_A_DG21_DG22NANNANT00.93 BB14
2027d5f-m1_A_DG21_DG22NANNANT00.81 BB20
2037d5f-m2_A_DG21_DG22NANNANT00.79 BB20
2047d5f-m3_A_DG21_DG22NANNANT00.84 BB20
2057d5f-m4_A_DG21_DG22NANNANT01.09 BB07
2067d5f-m5_A_DG21_DG22NANNANT00.77 BB20
2077d5f-m6_A_DG21_DG22NANNANT01.00 BB14
2087d5f-m7_A_DG21_DG22NANNANT01.15 BB08
2097d5f-m8_A_DG21_DG22NANNANT00.86 BB14
2107d5f-m9_A_DG21_DG22NANNANT01.14 BB08
2117d5f-m10_A_DG22_DT23NANNANT01.71 OP24
2127d5f-m1_A_DG22_DT23NANNANT00.57 IC06
2137d5f-m2_A_DG22_DT23NANNANT00.83 BB16
2147d5f-m3_A_DG22_DT23NANNANT01.70 OP24
2157d5f-m4_A_DG22_DT23NANNANT00.78 IC04
2167d5f-m5_A_DG22_DT23NANNANT00.65 IC06
2177d5f-m6_A_DG22_DT23NANNANT01.70 OP24
2187d5f-m7_A_DG22_DT23NANNANT00.97 IC04
2197d5f-m8_A_DG22_DT23NANNANT01.23 AB02
2207d5f-m9_A_DG22_DT23NANNANT00.91 IC04
2217d5f-m10_A_DT23_DG24NANNANT00.83 OP22
2227d5f-m1_A_DT23_DG24NANNANT01.26 BB14
2237d5f-m2_A_DT23_DG24NANNANT01.01 ZZ02
2247d5f-m3_A_DT23_DG24NANNANT01.26 BB14
2257d5f-m4_A_DT23_DG24NANNANT01.20 BB20
2267d5f-m5_A_DT23_DG24NANNANT00.99 ZZ02
2277d5f-m6_A_DT23_DG24NANNANT01.21 BB20
2287d5f-m7_A_DT23_DG24NANNANT01.40 BB10
2297d5f-m8_A_DT23_DG24NANNANT00.86 BB20
2307d5f-m9_A_DT23_DG24NANNANT01.17 BB20
2317d5f-m10_A_DG24_DG25NANNANT00.98 BB20
2327d5f-m1_A_DG24_DG25NANNANT01.17 BB07
2337d5f-m2_A_DG24_DG25NANNANT01.12 BB07
2347d5f-m3_A_DG24_DG25NANNANT00.77 BB20
2357d5f-m4_A_DG24_DG25NANNANT01.16 BB07
2367d5f-m5_A_DG24_DG25NANNANT00.81 BB20
2377d5f-m6_A_DG24_DG25NANNANT00.89 BB20
2387d5f-m7_A_DG24_DG25NANNANT00.82 BB20
2397d5f-m8_A_DG24_DG25NANNANT00.95 BB14
2407d5f-m9_A_DG24_DG25NANNANT00.89 BB20
2417d5f-m10_A_DG25_DT26NANNANT00.61 IC06
2427d5f-m1_A_DG25_DT26NANNANT01.64 OP24
2437d5f-m2_A_DG25_DT26NANNANT00.74 IC06
2447d5f-m3_A_DG25_DT26NANNANT00.52 IC06
2457d5f-m4_A_DG25_DT26NANNANT01.10 AB02
2467d5f-m5_A_DG25_DT26NANNANT01.64 OP24
2477d5f-m6_A_DG25_DT26NANNANT01.09 AB02
2487d5f-m7_A_DG25_DT26NANNANT00.69 IC04
2497d5f-m8_A_DG25_DT26ICLIC06120.48 IC06
2507d5f-m9_A_DG25_DT26NANNANT01.66 OP24
2517d5f-m10_A_DT26_DG27NANNANT01.13 BB20
2527d5f-m1_A_DT26_DG27NANNANT00.41 OP26
2537d5f-m2_A_DT26_DG27NANNANT01.40 BB10
2547d5f-m3_A_DT26_DG27NANNANT01.26 BB14
2557d5f-m4_A_DT26_DG27NANNANT01.25 BB08
2567d5f-m5_A_DT26_DG27NANNANT00.42 OP26
2577d5f-m6_A_DT26_DG27NANNANT01.09 BB20
2587d5f-m7_A_DT26_DG27NANNANT01.05 OP22
2597d5f-m8_A_DT26_DG27NANNANT01.18 OP22
2607d5f-m9_A_DT26_DG27NANNANT01.03 OP22

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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