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Conformers: ABBIImiBZICOPNSYNN
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Left-handed G-quadruplex containing two bulges

Results of the assignment of 54 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
017d5e_A_DG1_DG2NANNANT01.20 BB07
027d5e_A_DG2_DT3NANNANT00.65 IC06
037d5e_A_DT3_DG4NANNANT00.53 OP26
047d5e_A_DG4_DT5NANNANT00.84 OP21
057d5e_A_DT5_DG6NANNANT00.50 OP21
067d5e_A_DG6_DT7NANNANT00.89 BB00
077d5e_A_DT7_DG8NANNANT00.94 BB20
087d5e_A_DG8_DT9NANNANT01.01 OP21
097d5e_A_DT9_DG10NANNANT01.23 OP21
107d5e_A_DG10_DT11NANNANT00.60 IC06
117d5e_A_DT11_DG12NANNANT00.85 BB20
127d5e_A_DG12_DG13NANNANT00.91 BB20
137d5e_A_DG13_DT14NANNANT01.01 OP13
147d5e_A_DT14_DG15NANNANT01.82 OP21
157d5e_A_DG15_DT16NANNANT00.68 IC06
167d5e_A_DT16_DG17NANNANT00.94 ZZ02
177d5e_A_DG17_DG18NANNANT00.86 BB20
187d5e_A_DG18_DT19NANNANT00.70 IC06
197d5e_A_DT19_DG20NANNANT00.97 BB20
207d5e_A_DG20_DG21NANNANT00.88 BB20
217d5e_A_DG21_DT22NANNANT00.54 IC06
227d5e_A_DT22_DG23NANNANT00.99 ZZ02
237d5e_A_DG23_DG24NANNANT00.90 BB20
247d5e_A_DG24_DT25NANNANT00.68 IC06
257d5e_A_DT25_DG26NANNANT00.85 BB20
267d5e_A_DG26_DT27NANNANT00.92 OP04
277d5e_A_DT27_DT28OPNOP21110.88 OP21
287d5e_B_DG1_DG2NANNANT00.81 BB20
297d5e_B_DG2_DT3NANNANT00.78 BB16
307d5e_B_DT3_DG4NANNANT00.52 OP26
317d5e_B_DG4_DT5NANNANT00.77 OP21
327d5e_B_DT5_DG6NANNANT00.49 OP21
337d5e_B_DG6_DT7NANNANT00.90 BB00
347d5e_B_DT7_DG8NANNANT00.93 BB20
357d5e_B_DG8_DT9NANNANT01.69 OP17
367d5e_B_DT9_DG10NANNANT02.02 OP19
377d5e_B_DG10_DT11BBwBB1660.85 BB16
387d5e_B_DT11_DG12NANNANT00.89 BB20
397d5e_B_DG12_DG13NANNANT00.91 BB20
407d5e_B_DG13_DT14NANNANT01.03 OP13
417d5e_B_DT14_DG15NANNANT01.79 OP21
427d5e_B_DG15_DT16NANNANT00.63 IC06
437d5e_B_DT16_DG17NANNANT00.93 ZZ02
447d5e_B_DG17_DG18NANNANT00.87 BB20
457d5e_B_DG18_DT19NANNANT00.69 IC06
467d5e_B_DT19_DG20NANNANT00.99 BB20
477d5e_B_DG20_DG21NANNANT00.86 BB20
487d5e_B_DG21_DT22NANNANT00.56 IC06
497d5e_B_DT22_DG23NANNANT00.99 ZZ02
507d5e_B_DG23_DG24NANNANT00.89 BB20
517d5e_B_DG24_DT25NANNANT00.71 IC06
527d5e_B_DT25_DG26NANNANT00.89 BB20
537d5e_B_DG26_DT27NANNANT00.95 OP04
547d5e_B_DT27_DT28NANNANT00.97 OP21

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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