Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
Left-handed G-quadruplex containing one bulge
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 26 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 7d5d_A_DG1_DG2 | NAN | NANT | 0 | 1.23 |
| 02 | 7d5d_A_DG2_DT3 | NAN | NANT | 0 | 0.64 |
| 03 | 7d5d_A_DT3_DG4 | NAN | NANT | 0 | 0.52 |
| 04 | 7d5d_A_DG4_DT5 | NAN | NANT | 0 | 0.83 |
| 05 | 7d5d_A_DT5_DG6 | NAN | NANT | 0 | 0.47 |
| 06 | 7d5d_A_DG6_DT7 | NAN | NANT | 0 | 0.91 |
| 07 | 7d5d_A_DT7_DG8 | NAN | NANT | 0 | 0.93 |
| 08 | 7d5d_A_DG8_DG9 | NAN | NANT | 0 | 0.90 |
| 09 | 7d5d_A_DG9_DT10 | NAN | NANT | 0 | 0.62 |
| 10 | 7d5d_A_DT10_DG11 | NAN | NANT | 0 | 0.88 |
| 11 | 7d5d_A_DG11_DG12 | NAN | NANT | 0 | 0.88 |
| 12 | 7d5d_A_DG12_DT13 | NAN | NANT | 0 | 1.02 |
| 13 | 7d5d_A_DT13_DG14 | NAN | NANT | 0 | 1.82 |
| 14 | 7d5d_A_DG14_DT15 | NAN | NANT | 0 | 0.66 |
| 15 | 7d5d_A_DT15_DG16 | NAN | NANT | 0 | 0.93 |
| 16 | 7d5d_A_DG16_DG17 | NAN | NANT | 0 | 0.86 |
| 17 | 7d5d_A_DG17_DT18 | NAN | NANT | 0 | 0.61 |
| 18 | 7d5d_A_DT18_DG19 | NAN | NANT | 0 | 0.98 |
| 19 | 7d5d_A_DG19_DG20 | NAN | NANT | 0 | 0.85 |
| 20 | 7d5d_A_DG20_DT21 | NAN | NANT | 0 | 0.56 |
| 21 | 7d5d_A_DT21_DG22 | NAN | NANT | 0 | 0.99 |
| 22 | 7d5d_A_DG22_DG23 | NAN | NANT | 0 | 0.89 |
| 23 | 7d5d_A_DG23_DT24 | NAN | NANT | 0 | 0.72 |
| 24 | 7d5d_A_DT24_DG25 | NAN | NANT | 0 | 0.91 |
| 25 | 7d5d_A_DG25_DT26 | NAN | NANT | 0 | 0.92 |
| 26 | 7d5d_A_DT26_DT27 | NAN | NANT | 0 | 0.94 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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| Color by conformation group (pyramids) | |
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| visible |
| Color by NtC (balls) |
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| A-B | ||||
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| B-A | ||||
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| B | ||||
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