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Conformers: ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
NMR solution structures of the DNA minidumbbell formed by two CmCTG repeats at pH 5

Results of the assignment of 120 detected steps in 20 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
0017d0y-m10_A_5CM2_DT3NANNANT00.96 IC06
0027d0y-m11_A_5CM2_DT3NANNANT01.44 OP20
0037d0y-m12_A_5CM2_DT3NANNANT01.46 OP20
0047d0y-m13_A_5CM2_DT3NANNANT01.43 OP20
0057d0y-m14_A_5CM2_DT3NANNANT01.43 OP20
0067d0y-m15_A_5CM2_DT3NANNANT01.43 OP20
0077d0y-m16_A_5CM2_DT3NANNANT01.41 OP20
0087d0y-m17_A_5CM2_DT3NANNANT01.44 OP20
0097d0y-m18_A_5CM2_DT3NANNANT01.45 OP20
0107d0y-m19_A_5CM2_DT3NANNANT01.43 OP20
0117d0y-m1_A_5CM2_DT3NANNANT01.45 OP20
0127d0y-m20_A_5CM2_DT3NANNANT01.42 OP20
0137d0y-m2_A_5CM2_DT3NANNANT01.46 OP20
0147d0y-m3_A_5CM2_DT3NANNANT01.41 OP20
0157d0y-m4_A_5CM2_DT3NANNANT01.44 OP20
0167d0y-m5_A_5CM2_DT3NANNANT01.43 OP20
0177d0y-m6_A_5CM2_DT3NANNANT01.43 OP20
0187d0y-m7_A_5CM2_DT3NANNANT01.43 OP20
0197d0y-m8_A_5CM2_DT3NANNANT01.43 OP20
0207d0y-m9_A_5CM2_DT3NANNANT01.43 OP20
0217d0y-m10_A_DT3_DG4NANNANT00.71 ZZ2S
0227d0y-m11_A_DT3_DG4NANNANT00.65 ZZ2S
0237d0y-m12_A_DT3_DG4NANNANT00.71 ZZ2S
0247d0y-m13_A_DT3_DG4NANNANT00.64 ZZ2S
0257d0y-m14_A_DT3_DG4NANNANT00.55 ZZ1S
0267d0y-m15_A_DT3_DG4NANNANT00.68 ZZ2S
0277d0y-m16_A_DT3_DG4NANNANT00.59 ZZ1S
0287d0y-m17_A_DT3_DG4NANNANT00.66 ZZ2S
0297d0y-m18_A_DT3_DG4NANNANT00.72 ZZ2S
0307d0y-m19_A_DT3_DG4NANNANT00.67 ZZ2S
0317d0y-m1_A_DT3_DG4NANNANT00.66 ZZ2S
0327d0y-m20_A_DT3_DG4NANNANT00.64 ZZ2S
0337d0y-m2_A_DT3_DG4NANNANT00.66 ZZ2S
0347d0y-m3_A_DT3_DG4NANNANT00.64 ZZ2S
0357d0y-m4_A_DT3_DG4NANNANT00.67 ZZ2S
0367d0y-m5_A_DT3_DG4NANNANT00.65 ZZ2S
0377d0y-m6_A_DT3_DG4NANNANT00.69 ZZ2S
0387d0y-m7_A_DT3_DG4NANNANT00.66 ZZ2S
0397d0y-m8_A_DT3_DG4NANNANT00.64 ZZ2S
0407d0y-m9_A_DT3_DG4NANNANT00.65 ZZ2S
0417d0y-m10_A_DG4_DC5NANNANT01.40 OP08
0427d0y-m11_A_DG4_DC5NANNANT01.44 OP08
0437d0y-m12_A_DG4_DC5NANNANT01.43 OP08
0447d0y-m13_A_DG4_DC5NANNANT01.42 OP08
0457d0y-m14_A_DG4_DC5NANNANT01.47 OP08
0467d0y-m15_A_DG4_DC5NANNANT01.39 OP08
0477d0y-m16_A_DG4_DC5NANNANT01.48 OP08
0487d0y-m17_A_DG4_DC5NANNANT01.40 OP08
0497d0y-m18_A_DG4_DC5NANNANT01.43 OP08
0507d0y-m19_A_DG4_DC5NANNANT01.41 OP08
0517d0y-m1_A_DG4_DC5NANNANT01.47 OP08
0527d0y-m20_A_DG4_DC5NANNANT01.44 OP08
0537d0y-m2_A_DG4_DC5NANNANT01.44 OP08
0547d0y-m3_A_DG4_DC5NANNANT01.45 OP08
0557d0y-m4_A_DG4_DC5NANNANT01.44 OP08
0567d0y-m5_A_DG4_DC5NANNANT01.45 OP08
0577d0y-m6_A_DG4_DC5NANNANT01.47 OP08
0587d0y-m7_A_DG4_DC5NANNANT01.47 OP08
0597d0y-m8_A_DG4_DC5NANNANT01.47 OP08
0607d0y-m9_A_DG4_DC5NANNANT01.43 OP08
0617d0y-m10_A_DC5_5CM6NANNANT00.85 BB20
0627d0y-m11_A_DC5_5CM6NANNANT00.79 OP04
0637d0y-m12_A_DC5_5CM6NANNANT00.82 OP04
0647d0y-m13_A_DC5_5CM6NANNANT01.59 ZZ01
0657d0y-m14_A_DC5_5CM6NANNANT01.61 ZZ01
0667d0y-m15_A_DC5_5CM6NANNANT01.57 ZZ01
0677d0y-m16_A_DC5_5CM6NANNANT00.78 OP04
0687d0y-m17_A_DC5_5CM6NANNANT00.79 OP04
0697d0y-m18_A_DC5_5CM6NANNANT00.78 OP04
0707d0y-m19_A_DC5_5CM6NANNANT01.58 ZZ01
0717d0y-m1_A_DC5_5CM6NANNANT00.81 OP04
0727d0y-m20_A_DC5_5CM6NANNANT00.79 OP04
0737d0y-m2_A_DC5_5CM6NANNANT01.64 ZZ01
0747d0y-m3_A_DC5_5CM6NANNANT00.81 OP04
0757d0y-m4_A_DC5_5CM6NANNANT00.81 OP04
0767d0y-m5_A_DC5_5CM6NANNANT00.81 OP04
0777d0y-m6_A_DC5_5CM6NANNANT00.77 OP04
0787d0y-m7_A_DC5_5CM6NANNANT00.79 OP04
0797d0y-m8_A_DC5_5CM6NANNANT00.81 OP04
0807d0y-m9_A_DC5_5CM6NANNANT00.94 BB20
0817d0y-m10_A_5CM6_DT7NANNANT01.29 OP11
0827d0y-m11_A_5CM6_DT7NANNANT01.76 AB02
0837d0y-m12_A_5CM6_DT7NANNANT01.30 OP20
0847d0y-m13_A_5CM6_DT7NANNANT02.30 OP01
0857d0y-m14_A_5CM6_DT7NANNANT01.21 OP20
0867d0y-m15_A_5CM6_DT7NANNANT01.38 IC01
0877d0y-m16_A_5CM6_DT7NANNANT01.75 AB02
0887d0y-m17_A_5CM6_DT7NANNANT01.71 AB02
0897d0y-m18_A_5CM6_DT7NANNANT01.76 AB02
0907d0y-m19_A_5CM6_DT7NANNANT01.34 OP11
0917d0y-m1_A_5CM6_DT7NANNANT01.16 OP20
0927d0y-m20_A_5CM6_DT7NANNANT01.22 OP20
0937d0y-m2_A_5CM6_DT7NANNANT01.79 AB02
0947d0y-m3_A_5CM6_DT7NANNANT01.17 OP20
0957d0y-m4_A_5CM6_DT7NANNANT01.17 OP20
0967d0y-m5_A_5CM6_DT7NANNANT01.15 OP20
0977d0y-m6_A_5CM6_DT7NANNANT01.71 AB02
0987d0y-m7_A_5CM6_DT7NANNANT01.12 OP20
0997d0y-m8_A_5CM6_DT7NANNANT01.13 OP20
1007d0y-m9_A_5CM6_DT7NANNANT01.19 OP20
1017d0y-m10_A_DT7_DG8NANNANT01.30 BB08
1027d0y-m11_A_DT7_DG8NANNANT01.42 OP19
1037d0y-m12_A_DT7_DG8NANNANT01.37 BB08
1047d0y-m13_A_DT7_DG8NANNANT01.40 BB08
1057d0y-m14_A_DT7_DG8NANNANT01.56 OP19
1067d0y-m15_A_DT7_DG8NANNANT01.39 BB08
1077d0y-m16_A_DT7_DG8NANNANT01.56 OP19
1087d0y-m17_A_DT7_DG8NANNANT01.32 OP19
1097d0y-m18_A_DT7_DG8NANNANT01.53 OP19
1107d0y-m19_A_DT7_DG8NANNANT01.27 BB08
1117d0y-m1_A_DT7_DG8NANNANT01.46 OP19
1127d0y-m20_A_DT7_DG8NANNANT01.45 OP19
1137d0y-m2_A_DT7_DG8NANNANT01.56 OP19
1147d0y-m3_A_DT7_DG8NANNANT01.49 OP19
1157d0y-m4_A_DT7_DG8NANNANT01.53 OP19
1167d0y-m5_A_DT7_DG8NANNANT01.44 OP19
1177d0y-m6_A_DT7_DG8NANNANT01.49 OP19
1187d0y-m7_A_DT7_DG8NANNANT01.38 OP19
1197d0y-m8_A_DT7_DG8NANNANT01.45 OP19
1207d0y-m9_A_DT7_DG8NANNANT01.49 OP19

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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