Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
Crystal structure of fission yeast Pot1 and ssDNA
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 17 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 7cuh_B_DG1_DG2 | BBB | BB00 | 11 | 0.40 |
| 02 | 7cuh_B_DG2_DT3 | NAN | NANT | 0 | 0.80 |
| 03 | 7cuh_B_DT3_DT4 | NAN | NANT | 0 | 0.65 |
| 04 | 7cuh_B_DT4_DA5 | NAN | NANT | 0 | 0.75 |
| 05 | 7cuh_B_DA5_DC6 | NAN | NANT | 0 | 0.73 |
| 06 | 7cuh_B_DC6_DA7 | NAN | NANT | 0 | 1.27 |
| 07 | 7cuh_B_DA7_DG8 | NAN | NANT | 0 | 1.36 |
| 08 | 7cuh_B_DG8_DG9 | NAN | NANT | 0 | 1.63 |
| 09 | 7cuh_B_DG9_DG10 | NAN | NANT | 0 | 1.45 |
| 10 | 7cuh_B_DG10_DG11 | NAN | NANT | 0 | 1.39 |
| 11 | 7cuh_B_DG11_DT12 | NAN | NANT | 0 | 0.84 |
| 12 | 7cuh_B_DT12_DT13 | NAN | NANT | 0 | 1.02 |
| 13 | 7cuh_B_DT13_DA14 | NAN | NANT | 0 | 0.98 |
| 14 | 7cuh_B_DA14_DC15 | NAN | NANT | 0 | 1.32 |
| 15 | 7cuh_B_DC15_DG16 | BBB | BB00 | 56 | 0.58 |
| 16 | 7cuh_B_DG16_DG17 | NAN | NANT | 0 | 0.87 |
| 17 | 7cuh_B_DG17_DT18 | NAN | NANT | 0 | 0.99 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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| Color by conformation group (pyramids) | |
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| visible |
| Color by NtC (balls) |
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| A-B | ||||
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| B-A | ||||
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| B | ||||
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| IC | ||||
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