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Conformers: ABBIImiBZICOPNSYNN
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Synechocystis Cas1-Cas2/prespacer binary complex

Results of the assignment of 49 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
017cr6_G_DT7_DT8NANNANT00.52 OP26
027cr6_G_DT8_DG9NANNANT01.34 OP08
037cr6_G_DG9_DT10BBwBB16630.43 BB16
047cr6_G_DT10_DG11miBBB13620.27 BB13
057cr6_G_DG11_DC12BBBBB00360.49 BB00
067cr6_G_DC12_DC13NANNANT00.57 BB13
077cr6_G_DC13_DC14A-BAB04590.42 AB04
087cr6_G_DC14_DC15BBBBB00490.43 BB00
097cr6_G_DC15_DT16B12BB04430.37 BB04
107cr6_G_DT16_DG17BBBBB00670.30 BB00
117cr6_G_DG17_DG18B12BB04340.50 BB04
127cr6_G_DG18_DC19BBwBB03390.56 BB03
137cr6_G_DC19_DG20NANNANT00.62 BB00
147cr6_G_DG20_DG21BBBBB00370.30 BB00
157cr6_G_DG21_DT22BBBBB00630.32 BB00
167cr6_G_DT22_DC23BBBBB00820.22 BB00
177cr6_G_DC23_DG24BBBBB00920.18 BB00
187cr6_G_DG24_DC25B-ABA05180.38 BA05
197cr6_G_DC25_DT26NANNANT00.71 IC04
207cr6_G_DT26_DT27BBwBB03780.24 BB03
217cr6_G_DT27_DT28NANNANT00.53 BB13
227cr6_G_DT28_DC29NANNANT00.74 BB12
237cr6_G_DC29_DT30NANNANT01.28 IC03
247cr6_G_DT30_DT31NANNANT01.95 ZZ02
257cr6_G_DT31_DT32NANNANT01.77 OP21
267cr6_H_DG8_DA9AAAAA00180.55 AA00
277cr6_H_DA9_DA10AAwAA01360.35 AA01
287cr6_H_DA10_DA11NANNANT00.54 BB03
297cr6_H_DA11_DG12BBBBB0150.50 BB01
307cr6_H_DG12_DC13NANNANT00.41 BB02
317cr6_H_DC13_DG14BBBBB00360.48 BB00
327cr6_H_DG14_DA15BBwBB03650.46 BB03
337cr6_H_DA15_DC16BBwBB03340.50 BB03
347cr6_H_DC16_DC17BBwBB03520.24 BB03
357cr6_H_DC17_DG18NANNANT00.49 BB11
367cr6_H_DG18_DC19NANNANT00.48 BB03
377cr6_H_DC19_DC20NANNANT00.57 BA10
387cr6_H_DC20_DA21NANNANT00.40 AA01
397cr6_H_DA21_DG22NANNANT00.37 AB01
407cr6_H_DG22_DG23NANNANT00.35 BB00
417cr6_H_DG23_DG24BBBBB00230.44 BB00
427cr6_H_DG24_DG25BBwBB03680.19 BB03
437cr6_H_DG25_DC26BBwBB16720.30 BB16
447cr6_H_DC26_DA27NANNANT00.47 BA08
457cr6_H_DA27_DC28NANNANT00.49 AA10
467cr6_H_DC28_DA29A-BAB05320.34 AB05
477cr6_H_DA29_DT30NANNANT00.72 OP20
487cr6_H_DT30_DT31NANNANT00.78 OP12
497cr6_H_DT31_DT32NANNANT01.38 IC04

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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