Conformers:
ABBIImiBZICOPNSYNN
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Pectobacterium phage ZF40 apo-aca2 complexed with 26bp DNA substrate
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 52 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 7cqa_C_DT1_DT2 | NAN | NANT | 0 | 1.32 |
| 02 | 7cqa_C_DT2_DG3 | NAN | NANT | 0 | 0.76 |
| 03 | 7cqa_C_DG3_DC4 | NAN | NANT | 0 | 0.45 |
| 04 | 7cqa_C_DC4_DT5 | NAN | NANT | 0 | 0.68 |
| 05 | 7cqa_C_DT5_DT6 | BBB | BB01 | 49 | 0.32 |
| 06 | 7cqa_C_DT6_DG7 | B-A | BA08 | 65 | 0.22 |
| 07 | 7cqa_C_DG7_DT8 | AAA | AA00 | 20 | 0.37 |
| 08 | 7cqa_C_DT8_DT9 | A-B | AB01 | 24 | 0.33 |
| 09 | 7cqa_C_DT9_DC10 | miB | BB15 | 67 | 0.21 |
| 10 | 7cqa_C_DC10_DG11 | miB | BB15 | 62 | 0.31 |
| 11 | 7cqa_C_DG11_DC12 | BBB | BB00 | 46 | 0.18 |
| 12 | 7cqa_C_DC12_DG13 | B12 | BB04 | 65 | 0.23 |
| 13 | 7cqa_C_DG13_DA14 | BBB | BB00 | 70 | 0.16 |
| 14 | 7cqa_C_DA14_DT15 | BBB | BB01 | 86 | 0.14 |
| 15 | 7cqa_C_DT15_DT16 | BBB | BB00 | 53 | 0.26 |
| 16 | 7cqa_C_DT16_DG17 | BBB | BB00 | 84 | 0.24 |
| 17 | 7cqa_C_DG17_DC18 | NAN | NANT | 0 | 0.23 |
| 18 | 7cqa_C_DC18_DG19 | B12 | BB04 | 58 | 0.18 |
| 19 | 7cqa_C_DG19_DA20 | BBB | BB00 | 46 | 0.24 |
| 20 | 7cqa_C_DA20_DA21 | B12 | BB04 | 70 | 0.23 |
| 21 | 7cqa_C_DA21_DC22 | BBB | BB00 | 13 | 0.19 |
| 22 | 7cqa_C_DC22_DA23 | BBB | BB00 | 72 | 0.21 |
| 23 | 7cqa_C_DA23_DT24 | miB | BB10 | 79 | 0.40 |
| 24 | 7cqa_C_DT24_DA25 | NAN | NANT | 0 | 0.24 |
| 25 | 7cqa_C_DA25_DT26 | NAN | NANT | 0 | 0.55 |
| 26 | 7cqa_C_DT26_DA27 | NAN | NANT | 0 | 0.53 |
| 27 | 7cqa_D_DA1_DT2 | NAN | NANT | 0 | 1.12 |
| 28 | 7cqa_D_DT2_DA3 | NAN | NANT | 0 | 0.65 |
| 29 | 7cqa_D_DA3_DT4 | NAN | NANT | 0 | 0.40 |
| 30 | 7cqa_D_DT4_DA5 | NAN | NANT | 0 | 0.44 |
| 31 | 7cqa_D_DA5_DT6 | BBB | BB01 | 29 | 0.32 |
| 32 | 7cqa_D_DT6_DG7 | B-A | BA08 | 37 | 0.28 |
| 33 | 7cqa_D_DG7_DT8 | NAN | NANT | 0 | 0.45 |
| 34 | 7cqa_D_DT8_DT9 | BBB | BB00 | 28 | 0.20 |
| 35 | 7cqa_D_DT9_DC10 | miB | BB15 | 75 | 0.15 |
| 36 | 7cqa_D_DC10_DG11 | B12 | BB04 | 7 | 0.30 |
| 37 | 7cqa_D_DG11_DC12 | BBB | BB00 | 69 | 0.16 |
| 38 | 7cqa_D_DC12_DA13 | B12 | BB04 | 54 | 0.22 |
| 39 | 7cqa_D_DA13_DA14 | BBB | BB00 | 12 | 0.21 |
| 40 | 7cqa_D_DA14_DT15 | BBB | BB01 | 72 | 0.14 |
| 41 | 7cqa_D_DT15_DC16 | BBB | BB00 | 53 | 0.28 |
| 42 | 7cqa_D_DC16_DG17 | BBB | BB00 | 87 | 0.23 |
| 43 | 7cqa_D_DG17_DC18 | B12 | BB04 | 22 | 0.36 |
| 44 | 7cqa_D_DC18_DG19 | NAN | NANT | 0 | 0.43 |
| 45 | 7cqa_D_DG19_DA20 | BBB | BB00 | 62 | 0.27 |
| 46 | 7cqa_D_DA20_DA21 | miB | BB10 | 45 | 0.33 |
| 47 | 7cqa_D_DA21_DC22 | BBB | BB00 | 68 | 0.19 |
| 48 | 7cqa_D_DC22_DA23 | BBB | BB00 | 90 | 0.14 |
| 49 | 7cqa_D_DA23_DA24 | miB | BB10 | 88 | 0.33 |
| 50 | 7cqa_D_DA24_DG25 | B12 | BB04 | 71 | 0.23 |
| 51 | 7cqa_D_DG25_DC26 | NAN | NANT | 0 | 0.54 |
| 52 | 7cqa_D_DC26_DA27 | NAN | NANT | 0 | 0.69 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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| Color by conformation group (pyramids) | |
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