Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
Complex structure of DNA with self-catalyzed depurination activity
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 38 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 7cpw_a_DC1_DG2 | BBB | BB01 | 69 | 0.26 |
| 02 | 7cpw_a_DG2_DT3 | B-A | BA05 | 41 | 0.41 |
| 03 | 7cpw_a_DT3_DG4 | BBB | BB00 | 24 | 0.35 |
| 04 | 7cpw_a_DG4_DA5 | BBB | BB00 | 77 | 0.29 |
| 05 | 7cpw_a_DA5_DT6 | BBB | BB00 | 88 | 0.17 |
| 06 | 7cpw_a_DT6_DC7 | B-A | BA08 | 64 | 0.33 |
| 07 | 7cpw_a_DC7_DG8 | BBB | BB00 | 17 | 0.28 |
| 08 | 7cpw_a_DG8_DG9 | NAN | NANT | 0 | 0.62 |
| 09 | 7cpw_a_DG9_DA10 | NAN | NANT | 0 | 0.79 |
| 10 | 7cpw_a_DA10_DG11 | NAN | NANT | 0 | 0.70 |
| 11 | 7cpw_a_DG11_DA12 | BB2 | BB08 | 64 | 0.30 |
| 12 | 7cpw_a_DA12_DC13 | BBw | BB17 | 45 | 0.35 |
| 13 | 7cpw_a_DC13_DG14 | BBB | BB00 | 47 | 0.48 |
| 14 | 7cpw_a_DG14_DA15 | BBB | BB00 | 80 | 0.13 |
| 15 | 7cpw_a_DA15_DT16 | BBB | BB01 | 84 | 0.17 |
| 16 | 7cpw_a_DT16_DC17 | BBB | BB01 | 55 | 0.26 |
| 17 | 7cpw_a_DC17_DA18 | BBB | BB01 | 80 | 0.16 |
| 18 | 7cpw_a_DA18_DC19 | NAN | NANT | 0 | 0.48 |
| 19 | 7cpw_a_DC19_DG20 | AAA | AA00 | 32 | 0.32 |
| 20 | 7cpw_b_DC1_DG2 | BBB | BB01 | 67 | 0.30 |
| 21 | 7cpw_b_DG2_DT3 | B-A | BA05 | 34 | 0.42 |
| 22 | 7cpw_b_DT3_DG4 | BBB | BB00 | 26 | 0.34 |
| 23 | 7cpw_b_DG4_DA5 | BBB | BB00 | 75 | 0.31 |
| 24 | 7cpw_b_DA5_DT6 | BBB | BB00 | 88 | 0.19 |
| 25 | 7cpw_b_DT6_DC7 | B-A | BA08 | 63 | 0.33 |
| 26 | 7cpw_b_DC7_DG8 | A-B | AB03 | 79 | 0.25 |
| 27 | 7cpw_b_DG8_DG9 | NAN | NANT | 0 | 0.64 |
| 28 | 7cpw_b_DG9_DA10 | NAN | NANT | 0 | 0.68 |
| 29 | 7cpw_b_DA10_DG11 | NAN | NANT | 0 | 0.70 |
| 30 | 7cpw_b_DG11_DA12 | BB2 | BB07 | 37 | 0.35 |
| 31 | 7cpw_b_DA12_DC13 | NAN | NANT | 0 | 0.37 |
| 32 | 7cpw_b_DC13_DG14 | BBB | BB00 | 46 | 0.46 |
| 33 | 7cpw_b_DG14_DA15 | BBB | BB00 | 82 | 0.19 |
| 34 | 7cpw_b_DA15_DT16 | BBB | BB01 | 89 | 0.15 |
| 35 | 7cpw_b_DT16_DC17 | BBB | BB01 | 58 | 0.25 |
| 36 | 7cpw_b_DC17_DA18 | BBB | BB01 | 82 | 0.15 |
| 37 | 7cpw_b_DA18_DC19 | B-A | BA01 | 7 | 0.46 |
| 38 | 7cpw_b_DC19_DG20 | AAA | AA00 | 41 | 0.31 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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