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Conformers: ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
A 2:1 stoichiometric complex of anticancer drug 4'-Epiadriamycin bound to parallel G-quadruplex DNA [d-(TTGGGGT)]4.

Results of the assignment of 240 detected steps in 10 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
0017cps-m10_A_DT1_DT2NANNANT00.73 ZZ02
0027cps-m1_A_DT1_DT2NANNANT00.75 ZZ02
0037cps-m2_A_DT1_DT2NANNANT00.73 ZZ02
0047cps-m3_A_DT1_DT2NANNANT00.80 ZZ02
0057cps-m4_A_DT1_DT2NANNANT00.61 ZZ02
0067cps-m5_A_DT1_DT2NANNANT00.77 ZZ02
0077cps-m6_A_DT1_DT2NANNANT00.76 OP22
0087cps-m7_A_DT1_DT2NANNANT00.64 ZZ02
0097cps-m8_A_DT1_DT2NANNANT00.78 ZZ02
0107cps-m9_A_DT1_DT2NANNANT00.61 ZZ02
0117cps-m10_A_DT2_DG3AAAAA02630.31 AA02
0127cps-m1_A_DT2_DG3NANNANT00.57 BA05
0137cps-m2_A_DT2_DG3NANNANT00.57 BA05
0147cps-m3_A_DT2_DG3NANNANT00.51 BA05
0157cps-m4_A_DT2_DG3AAAAA02570.40 AA02
0167cps-m5_A_DT2_DG3NANNANT00.50 BB01
0177cps-m6_A_DT2_DG3NANNANT00.50 BA05
0187cps-m7_A_DT2_DG3AAAAA02250.49 AA02
0197cps-m8_A_DT2_DG3NANNANT00.59 BA05
0207cps-m9_A_DT2_DG3NANNANT00.59 BA05
0217cps-m10_A_DG3_DG4A-BAB01440.27 AB01
0227cps-m1_A_DG3_DG4A-BAB01760.27 AB01
0237cps-m2_A_DG3_DG4A-BAB01530.30 AB01
0247cps-m3_A_DG3_DG4A-BAB01570.34 AB01
0257cps-m4_A_DG3_DG4A-BAB01640.34 AB01
0267cps-m5_A_DG3_DG4BBBBB01100.40 BB01
0277cps-m6_A_DG3_DG4A-BAB01730.33 AB01
0287cps-m7_A_DG3_DG4AAAAA02710.32 AA02
0297cps-m8_A_DG3_DG4A-BAB01710.31 AB01
0307cps-m9_A_DG3_DG4A-BAB01850.25 AB01
0317cps-m10_A_DG4_DG5BB2BB07180.23 BB07
0327cps-m1_A_DG4_DG5BBBBB00540.39 BB00
0337cps-m2_A_DG4_DG5BB2BB07590.36 BB07
0347cps-m3_A_DG4_DG5BB2BB07320.48 BB07
0357cps-m4_A_DG4_DG5BBBBB00690.29 BB00
0367cps-m5_A_DG4_DG5BB2BB07360.47 BB07
0377cps-m6_A_DG4_DG5BBBBB00350.57 BB00
0387cps-m7_A_DG4_DG5A-BAB01490.35 AB01
0397cps-m8_A_DG4_DG5BBBBB00170.46 BB00
0407cps-m9_A_DG4_DG5BBBBB00590.34 BB00
0417cps-m10_A_DG5_DG6BBBBB01620.20 BB01
0427cps-m1_A_DG5_DG6BB2BB07630.32 BB07
0437cps-m2_A_DG5_DG6BB2BB07730.30 BB07
0447cps-m3_A_DG5_DG6BBBBB00660.34 BB00
0457cps-m4_A_DG5_DG6BB2BB07590.37 BB07
0467cps-m5_A_DG5_DG6BB2BB07560.39 BB07
0477cps-m6_A_DG5_DG6B12BB04510.40 BB04
0487cps-m7_A_DG5_DG6BB2BB07670.32 BB07
0497cps-m8_A_DG5_DG6BB2BB07650.26 BB07
0507cps-m9_A_DG5_DG6BB2BB07430.48 BB07
0517cps-m10_A_DG6_DT7NANNANT01.40 IC06
0527cps-m1_A_DG6_DT7NANNANT00.88 IC03
0537cps-m2_A_DG6_DT7NANNANT01.10 IC03
0547cps-m3_A_DG6_DT7NANNANT01.50 IC06
0557cps-m4_A_DG6_DT7NANNANT01.29 IC01
0567cps-m5_A_DG6_DT7NANNANT01.29 OP20
0577cps-m6_A_DG6_DT7NANNANT00.93 IC01
0587cps-m7_A_DG6_DT7NANNANT01.21 OP20
0597cps-m8_A_DG6_DT7NANNANT01.57 OP20
0607cps-m9_A_DG6_DT7NANNANT01.46 IC06
0617cps-m10_B_DT8_DT9OPNOP22640.73 OP22
0627cps-m1_B_DT8_DT9NANNANT01.09 OP22
0637cps-m2_B_DT8_DT9OPNOP22660.67 OP22
0647cps-m3_B_DT8_DT9NANNANT01.01 OP22
0657cps-m4_B_DT8_DT9B-ABA01280.32 BA01
0667cps-m5_B_DT8_DT9OPNOP22610.65 OP22
0677cps-m6_B_DT8_DT9OPNOP22640.75 OP22
0687cps-m7_B_DT8_DT9NANNANT00.95 OP22
0697cps-m8_B_DT8_DT9OPNOP22580.60 OP22
0707cps-m9_B_DT8_DT9NANNANT00.81 OP22
0717cps-m10_B_DT9_DG10BBBBB01240.24 BB01
0727cps-m1_B_DT9_DG10B-ABA05830.15 BA05
0737cps-m2_B_DT9_DG10B-ABA05400.11 BA05
0747cps-m3_B_DT9_DG10B-ABA01630.29 BA01
0757cps-m4_B_DT9_DG10A-BAB01380.42 AB01
0767cps-m5_B_DT9_DG10B-ABA01580.31 BA01
0777cps-m6_B_DT9_DG10BBBBB00670.21 BB00
0787cps-m7_B_DT9_DG10B-ABA05810.14 BA05
0797cps-m8_B_DT9_DG10B-ABA05860.20 BA05
0807cps-m9_B_DT9_DG10B-ABA05800.16 BA05
0817cps-m10_B_DG10_DG11A-BAB03380.41 AB03
0827cps-m1_B_DG10_DG11AAAAA02530.52 AA02
0837cps-m2_B_DG10_DG11NANNANT00.57 AA02
0847cps-m3_B_DG10_DG11A-BAB01760.34 AB01
0857cps-m4_B_DG10_DG11BBBBB00250.45 BB00
0867cps-m5_B_DG10_DG11A-BAB01730.32 AB01
0877cps-m6_B_DG10_DG11B-ABA01310.27 BA01
0887cps-m7_B_DG10_DG11A-BAB01620.34 AB01
0897cps-m8_B_DG10_DG11NANNANT00.77 AA02
0907cps-m9_B_DG10_DG11A-BAB03290.56 AB03
0917cps-m10_B_DG11_DG12BB2BB07480.45 BB07
0927cps-m1_B_DG11_DG12A-BAB01790.36 AB01
0937cps-m2_B_DG11_DG12BBBBB00380.36 BB00
0947cps-m3_B_DG11_DG12BBBBB00420.46 BB00
0957cps-m4_B_DG11_DG12BB2BB07510.34 BB07
0967cps-m5_B_DG11_DG12BBBBB00470.38 BB00
0977cps-m6_B_DG11_DG12A-BAB01610.45 AB01
0987cps-m7_B_DG11_DG12BBBBB00520.35 BB00
0997cps-m8_B_DG11_DG12A-BAB01500.49 AB01
1007cps-m9_B_DG11_DG12BB2BB07350.26 BB07
1017cps-m10_B_DG12_DG13BB2BB07670.19 BB07
1027cps-m1_B_DG12_DG13BB2BB07650.20 BB07
1037cps-m2_B_DG12_DG13B12BB04180.50 BB04
1047cps-m3_B_DG12_DG13BB2BB07570.28 BB07
1057cps-m4_B_DG12_DG13BBBBB00590.34 BB00
1067cps-m5_B_DG12_DG13BB2BB07570.38 BB07
1077cps-m6_B_DG12_DG13BB2BB07510.43 BB07
1087cps-m7_B_DG12_DG13BB2BB07240.50 BB07
1097cps-m8_B_DG12_DG13BB2BB07530.29 BB07
1107cps-m9_B_DG12_DG13BBBBB00360.45 BB00
1117cps-m10_B_DG13_DT14NANNANT00.73 BB02
1127cps-m1_B_DG13_DT14NANNANT00.76 BB02
1137cps-m2_B_DG13_DT14NANNANT00.94 BB02
1147cps-m3_B_DG13_DT14NANNANT00.64 BB02
1157cps-m4_B_DG13_DT14NANNANT00.79 BB02
1167cps-m5_B_DG13_DT14NANNANT00.71 IC03
1177cps-m6_B_DG13_DT14NANNANT00.99 BB02
1187cps-m7_B_DG13_DT14NANNANT00.72 IC03
1197cps-m8_B_DG13_DT14NANNANT00.63 BB02
1207cps-m9_B_DG13_DT14NANNANT00.81 BB02
1217cps-m10_C_DT15_DT16NANNANT00.47 BB07
1227cps-m1_C_DT15_DT16NANNANT00.94 BB16
1237cps-m2_C_DT15_DT16OPNOP22390.76 OP22
1247cps-m3_C_DT15_DT16BBBBB00490.32 BB00
1257cps-m4_C_DT15_DT16NANNANT00.57 BB16
1267cps-m5_C_DT15_DT16B-ABA17670.32 BA17
1277cps-m6_C_DT15_DT16BBBBB00360.46 BB00
1287cps-m7_C_DT15_DT16NANNANT00.73 AA09
1297cps-m8_C_DT15_DT16NANNANT00.93 BB16
1307cps-m9_C_DT15_DT16BB2BB07260.43 BB07
1317cps-m10_C_DT16_DG17NANNANT00.61 BB01
1327cps-m1_C_DT16_DG17BBBBB01530.25 BB01
1337cps-m2_C_DT16_DG17BBBBB01580.36 BB01
1347cps-m3_C_DT16_DG17NANNANT00.62 AB03
1357cps-m4_C_DT16_DG17B-ABA01580.29 BA01
1367cps-m5_C_DT16_DG17A-BAB03200.60 AB03
1377cps-m6_C_DT16_DG17BBwBB16120.70 BB16
1387cps-m7_C_DT16_DG17NANNANT00.67 AA02
1397cps-m8_C_DT16_DG17B-ABA0590.29 BA05
1407cps-m9_C_DT16_DG17BBBBB01180.35 BB01
1417cps-m10_C_DG17_DG18AAAAA02650.71 AA02
1427cps-m1_C_DG17_DG18BBBBB00330.46 BB00
1437cps-m2_C_DG17_DG18BBBBB00110.61 BB00
1447cps-m3_C_DG17_DG18A-BAB03330.59 AB03
1457cps-m4_C_DG17_DG18A-BAB01740.34 AB01
1467cps-m5_C_DG17_DG18AAAAA02360.69 AA02
1477cps-m6_C_DG17_DG18NANNANT00.63 AA02
1487cps-m7_C_DG17_DG18A-BAB01840.25 AB01
1497cps-m8_C_DG17_DG18NANNANT00.56 AB03
1507cps-m9_C_DG17_DG18AAAAA02660.67 AA02
1517cps-m10_C_DG18_DG19A-BAB01520.49 AB01
1527cps-m1_C_DG18_DG19BB2BB07240.51 BB07
1537cps-m2_C_DG18_DG19BB2BB07130.39 BB07
1547cps-m3_C_DG18_DG19BB2BB07280.32 BB07
1557cps-m4_C_DG18_DG19BBBBB00130.58 BB00
1567cps-m5_C_DG18_DG19A-BAB01670.33 AB01
1577cps-m6_C_DG18_DG19A-BAB01570.42 AB01
1587cps-m7_C_DG18_DG19NANNANT00.45 BB16
1597cps-m8_C_DG18_DG19BB2BB07270.35 BB07
1607cps-m9_C_DG18_DG19A-BAB01790.37 AB01
1617cps-m10_C_DG19_DG20NANNANT00.29 BB08
1627cps-m1_C_DG19_DG20NANNANT00.42 BB08
1637cps-m2_C_DG19_DG20BB2BB08490.33 BB08
1647cps-m3_C_DG19_DG20NANNANT00.38 BB08
1657cps-m4_C_DG19_DG20BB2BB08300.43 BB08
1667cps-m5_C_DG19_DG20BB2BB08510.35 BB08
1677cps-m6_C_DG19_DG20BB2BB08460.25 BB08
1687cps-m7_C_DG19_DG20NANNANT00.49 BB08
1697cps-m8_C_DG19_DG20BB2BB08400.33 BB08
1707cps-m9_C_DG19_DG20BB2BB08540.27 BB08
1717cps-m10_C_DG20_DT21NANNANT00.72 BB02
1727cps-m1_C_DG20_DT21NANNANT01.26 BB15
1737cps-m2_C_DG20_DT21NANNANT01.30 BB15
1747cps-m3_C_DG20_DT21NANNANT00.94 BB02
1757cps-m4_C_DG20_DT21NANNANT01.30 BB15
1767cps-m5_C_DG20_DT21NANNANT01.32 BB15
1777cps-m6_C_DG20_DT21NANNANT01.08 IC06
1787cps-m7_C_DG20_DT21NANNANT01.26 BB15
1797cps-m8_C_DG20_DT21NANNANT01.16 IC06
1807cps-m9_C_DG20_DT21NANNANT00.95 BB02
1817cps-m10_D_DT22_DT23NANNANT00.53 IC03
1827cps-m1_D_DT22_DT23NANNANT00.84 BB02
1837cps-m2_D_DT22_DT23NANNANT00.68 IC01
1847cps-m3_D_DT22_DT23NANNANT00.92 BB02
1857cps-m4_D_DT22_DT23NANNANT00.54 IC03
1867cps-m5_D_DT22_DT23NANNANT00.53 IC03
1877cps-m6_D_DT22_DT23NANNANT00.57 IC03
1887cps-m7_D_DT22_DT23NANNANT00.54 IC03
1897cps-m8_D_DT22_DT23NANNANT00.52 IC03
1907cps-m9_D_DT22_DT23NANNANT00.62 IC03
1917cps-m10_D_DT23_DG24B-ABA05400.32 BA05
1927cps-m1_D_DT23_DG24B-ABA01440.44 BA01
1937cps-m2_D_DT23_DG24B-ABA05270.32 BA05
1947cps-m3_D_DT23_DG24B-ABA05760.26 BA05
1957cps-m4_D_DT23_DG24BBBBB00330.31 BB00
1967cps-m5_D_DT23_DG24B-ABA05360.34 BA05
1977cps-m6_D_DT23_DG24B-ABA05640.23 BA05
1987cps-m7_D_DT23_DG24B-ABA05620.33 BA05
1997cps-m8_D_DT23_DG24B-ABA05410.26 BA05
2007cps-m9_D_DT23_DG24B-ABA05650.35 BA05
2017cps-m10_D_DG24_DG25A-BAB0190.51 AB01
2027cps-m1_D_DG24_DG25A-BAB01500.47 AB01
2037cps-m2_D_DG24_DG25A-BAB01310.43 AB01
2047cps-m3_D_DG24_DG25A-BAB01360.42 AB01
2057cps-m4_D_DG24_DG25BBBBB00440.33 BB00
2067cps-m5_D_DG24_DG25A-BAB01350.44 AB01
2077cps-m6_D_DG24_DG25AAAAA02740.42 AA02
2087cps-m7_D_DG24_DG25A-BAB01290.49 AB01
2097cps-m8_D_DG24_DG25A-BAB01290.43 AB01
2107cps-m9_D_DG24_DG25BBBBB00260.31 BB00
2117cps-m10_D_DG25_DG26BB2BB07430.24 BB07
2127cps-m1_D_DG25_DG26BB2BB07460.33 BB07
2137cps-m2_D_DG25_DG26BB2BB07500.31 BB07
2147cps-m3_D_DG25_DG26BB2BB07520.28 BB07
2157cps-m4_D_DG25_DG26BB2BB07280.35 BB07
2167cps-m5_D_DG25_DG26BB2BB07510.29 BB07
2177cps-m6_D_DG25_DG26A-BAB01170.37 AB01
2187cps-m7_D_DG25_DG26BB2BB07370.42 BB07
2197cps-m8_D_DG25_DG26BB2BB07430.34 BB07
2207cps-m9_D_DG25_DG26BB2BB07290.42 BB07
2217cps-m10_D_DG26_DG27NANNANT00.50 BB08
2227cps-m1_D_DG26_DG27BB2BB08150.44 BB08
2237cps-m2_D_DG26_DG27NANNANT00.47 BB08
2247cps-m3_D_DG26_DG27BB2BB08210.47 BB08
2257cps-m4_D_DG26_DG27NANNANT00.37 BB08
2267cps-m5_D_DG26_DG27NANNANT00.49 BB08
2277cps-m6_D_DG26_DG27BB2BB08510.25 BB08
2287cps-m7_D_DG26_DG27BB2BB08310.40 BB08
2297cps-m8_D_DG26_DG27NANNANT00.24 BB08
2307cps-m9_D_DG26_DG27BB2BB08480.29 BB08
2317cps-m10_D_DG27_DT28NANNANT01.22 IC06
2327cps-m1_D_DG27_DT28NANNANT00.70 BB02
2337cps-m2_D_DG27_DT28NANNANT00.64 BB02
2347cps-m3_D_DG27_DT28NANNANT01.38 IC02
2357cps-m4_D_DG27_DT28NANNANT00.70 BB02
2367cps-m5_D_DG27_DT28NANNANT00.55 BB02
2377cps-m6_D_DG27_DT28NANNANT00.73 BB02
2387cps-m7_D_DG27_DT28NANNANT00.54 BB02
2397cps-m8_D_DG27_DT28NANNANT00.66 BB02
2407cps-m9_D_DG27_DT28NANNANT01.07 IC06

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

Browse conformers

Return up to random steps in PDB structures ( include large structures )

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