Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
Structure of NF-kB p52 homodimer bound to P-Selectin kB DNA fragment
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 33 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 7cli_C_DC1_DA2 | NAN | NANT | 0 | 0.43 |
| 02 | 7cli_C_DA2_DA3 | B-A | BA05 | 38 | 0.27 |
| 03 | 7cli_C_DA3_DG4 | NAN | NANT | 0 | 0.31 |
| 04 | 7cli_C_DG4_DG5 | NAN | NANT | 0 | 0.47 |
| 05 | 7cli_C_DG5_DG6 | NAN | NANT | 0 | 0.43 |
| 06 | 7cli_C_DG6_DG7 | NAN | NANT | 0 | 0.53 |
| 07 | 7cli_C_DG7_DT8 | NAN | NANT | 0 | 0.58 |
| 08 | 7cli_C_DT8_DC9 | NAN | NANT | 0 | 0.26 |
| 09 | 7cli_C_DC9_DA10 | NAN | NANT | 0 | 0.46 |
| 10 | 7cli_C_DA10_DC11 | B-A | BA05 | 54 | 0.23 |
| 11 | 7cli_C_DC11_DC12 | BBB | BB01 | 37 | 0.25 |
| 12 | 7cli_C_DC12_DC13 | NAN | NANT | 0 | 0.54 |
| 13 | 7cli_C_DC13_DC14 | AAA | AA00 | 4 | 0.31 |
| 14 | 7cli_C_DC14_DC15 | NAN | NANT | 0 | 0.55 |
| 15 | 7cli_C_DC15_DT16 | NAN | NANT | 0 | 0.45 |
| 16 | 7cli_C_DT16_DT17 | NAN | NANT | 0 | 0.50 |
| 17 | 7cli_D_DG1_DA2 | NAN | NANT | 0 | 0.49 |
| 18 | 7cli_D_DA2_DA3 | NAN | NANT | 0 | 0.49 |
| 19 | 7cli_D_DA3_DG4 | B-A | BA05 | 39 | 0.26 |
| 20 | 7cli_D_DG4_DG5 | NAN | NANT | 0 | 0.32 |
| 21 | 7cli_D_DG5_DG6 | NAN | NANT | 0 | 0.42 |
| 22 | 7cli_D_DG6_DG7 | NAN | NANT | 0 | 0.29 |
| 23 | 7cli_D_DG7_DG8 | BBB | BB01 | 41 | 0.24 |
| 24 | 7cli_D_DG8_DT9 | NAN | NANT | 0 | 0.45 |
| 25 | 7cli_D_DT9_DG10 | NAN | NANT | 0 | 0.54 |
| 26 | 7cli_D_DG10_DA11 | NAN | NANT | 0 | 0.36 |
| 27 | 7cli_D_DA11_DC12 | BBB | BB01 | 37 | 0.28 |
| 28 | 7cli_D_DC12_DC13 | NAN | NANT | 0 | 0.35 |
| 29 | 7cli_D_DC13_DC14 | NAN | NANT | 0 | 0.50 |
| 30 | 7cli_D_DC14_DC15 | NAN | NANT | 0 | 0.53 |
| 31 | 7cli_D_DC15_DT16 | NAN | NANT | 0 | 0.48 |
| 32 | 7cli_D_DT16_DT17 | NAN | NANT | 0 | 0.60 |
| 33 | 7cli_D_DT17_DG18 | NAN | NANT | 0 | 0.54 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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