Conformers:
ABBIImiBZICOPNSYNN
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The crystal structure of Trypanosoma brucei RNase D complex with RNA U12
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 9 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 1 | 7c45_D_U3_U4 | NAN | NANT | 0 | 0.71 |
| 2 | 7c45_D_U4_U5 | NAN | NANT | 0 | 0.52 |
| 3 | 7c45_D_U5_U6 | NAN | NANT | 0 | 1.08 |
| 4 | 7c45_D_U6_U7 | NAN | NANT | 0 | 0.73 |
| 5 | 7c45_D_U7_U8 | OPN | OP20 | 87 | 0.24 |
| 6 | 7c45_D_U8_U9 | NAN | NANT | 0 | 1.59 |
| 7 | 7c45_D_U9_U10 | NAN | NANT | 0 | 0.41 |
| 8 | 7c45_D_U10_U11 | AAA | AA00 | 49 | 0.17 |
| 9 | 7c45_D_U11_U12 | AAA | AA00 | 60 | 0.36 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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