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Conformers: ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
Structure of Bacillus subtilis HxlR, wild type in complex with formaldehyde and DNA

Results of the assignment of 114 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
0017bzg_C_DC1_DA2BBBBB00560.41 BB00
0027bzg_C_DA2_DG3B-ABA09800.19 BA09
0037bzg_C_DG3_DT4NANNANT00.78 IC03
0047bzg_C_DT4_DA5BBBBB00110.30 BB00
0057bzg_C_DA5_DT6BBwBB02680.24 BB02
0067bzg_C_DT6_DC7BBBBB00640.21 BB00
0077bzg_C_DC7_DC8BBBBB00260.21 BB00
0087bzg_C_DC8_DT9B12BB04860.21 BB04
0097bzg_C_DT9_DC10NANNANT00.32 BB10
0107bzg_C_DC10_DG11BB2BB07550.24 BB07
0117bzg_C_DG11_DA12BB2BB07950.18 BB07
0127bzg_C_DA12_DG13B-ABA05900.24 BA05
0137bzg_C_DG13_DG14BBBBB00170.34 BB00
0147bzg_C_DG14_DA15BBBBB00210.42 BB00
0157bzg_C_DA15_DT16B-ABA05820.22 BA05
0167bzg_C_DT16_DA17BBBBB01600.26 BB01
0177bzg_C_DA17_DC18BBBBB01810.17 BB01
0187bzg_C_DC18_DT19BBBBB00550.32 BB00
0197bzg_C_DT19_DG20BB2BB07620.33 BB07
0207bzg_D_DC1_DA2BBBBB00750.29 BB00
0217bzg_D_DA2_DG3B-ABA09780.28 BA09
0227bzg_D_DG3_DT4NANNANT00.73 IC03
0237bzg_D_DT4_DA5BBBBB00150.29 BB00
0247bzg_D_DA5_DT6BBwBB02710.20 BB02
0257bzg_D_DT6_DC7BBBBB00580.29 BB00
0267bzg_D_DC7_DC8BBBBB00450.23 BB00
0277bzg_D_DC8_DT9B12BB04480.32 BB04
0287bzg_D_DT9_DC10miBBB10320.28 BB10
0297bzg_D_DC10_DG11BB2BB07680.17 BB07
0307bzg_D_DG11_DA12BB2BB07970.22 BB07
0317bzg_D_DA12_DG13B-ABA05470.33 BA05
0327bzg_D_DG13_DG14BBBBB01680.17 BB01
0337bzg_D_DG14_DA15miBBB15490.37 BB15
0347bzg_D_DA15_DT16BBBBB00370.33 BB00
0357bzg_D_DT16_DA17BBBBB01670.23 BB01
0367bzg_D_DA17_DC18BBBBB01390.22 BB01
0377bzg_D_DC18_DT19BBBBB00350.43 BB00
0387bzg_D_DT19_DG20BB2BB07620.25 BB07
0397bzg_G_DC1_DA2BBBBB00680.38 BB00
0407bzg_G_DA2_DG3B-ABA09670.18 BA09
0417bzg_G_DG3_DT4NANNANT00.74 IC03
0427bzg_G_DT4_DA5BBBBB00110.36 BB00
0437bzg_G_DA5_DT6BBwBB02770.23 BB02
0447bzg_G_DT6_DC7BBBBB00570.29 BB00
0457bzg_G_DC7_DC8miBBB15500.27 BB15
0467bzg_G_DC8_DT9B12BB04700.26 BB04
0477bzg_G_DT9_DC10B12BB04450.28 BB04
0487bzg_G_DC10_DG11BB2BB07380.36 BB07
0497bzg_G_DG11_DA12BB2BB07950.18 BB07
0507bzg_G_DA12_DG13B-ABA05450.26 BA05
0517bzg_G_DG13_DG14BBBBB00150.34 BB00
0527bzg_G_DG14_DA15B12BB04420.29 BB04
0537bzg_G_DA15_DT16BBBBB01730.22 BB01
0547bzg_G_DT16_DA17BBBBB00290.24 BB00
0557bzg_G_DA17_DC18BBBBB01790.17 BB01
0567bzg_G_DC18_DT19BBBBB00510.36 BB00
0577bzg_G_DT19_DG20BB2BB07460.32 BB07
0587bzg_H_DC1_DA2BBBBB00770.32 BB00
0597bzg_H_DA2_DG3B-ABA09820.23 BA09
0607bzg_H_DG3_DT4NANNANT00.72 IC03
0617bzg_H_DT4_DA5NANNANT00.34 BB15
0627bzg_H_DA5_DT6BBwBB02680.23 BB02
0637bzg_H_DT6_DC7BBBBB00410.30 BB00
0647bzg_H_DC7_DC8BBBBB00340.27 BB00
0657bzg_H_DC8_DT9B12BB04750.28 BB04
0667bzg_H_DT9_DC10miBBB15150.40 BB15
0677bzg_H_DC10_DG11BB2BB07110.20 BB07
0687bzg_H_DG11_DA12BB2BB07450.18 BB07
0697bzg_H_DA12_DG13B-ABA05790.25 BA05
0707bzg_H_DG13_DG14BBBBB01460.21 BB01
0717bzg_H_DG14_DA15miBBB15350.40 BB15
0727bzg_H_DA15_DT16BBBBB00160.31 BB00
0737bzg_H_DT16_DA17BBBBB00370.23 BB00
0747bzg_H_DA17_DC18BBBBB01810.13 BB01
0757bzg_H_DC18_DT19BBBBB00530.34 BB00
0767bzg_H_DT19_DG20BB2BB07550.27 BB07
0777bzg_K_DC1_DA2BBBBB00590.41 BB00
0787bzg_K_DA2_DG3B-ABA09830.19 BA09
0797bzg_K_DG3_DT4NANNANT00.79 IC03
0807bzg_K_DT4_DA5NANNANT00.66 BB16
0817bzg_K_DA5_DT6BBwBB02670.28 BB02
0827bzg_K_DT6_DC7BBBBB00370.30 BB00
0837bzg_K_DC7_DC8BBBBB00140.25 BB00
0847bzg_K_DC8_DT9B12BB04810.28 BB04
0857bzg_K_DT9_DC10miBBB10230.31 BB10
0867bzg_K_DC10_DG11BB2BB07470.21 BB07
0877bzg_K_DG11_DA12BB2BB07850.18 BB07
0887bzg_K_DA12_DG13B-ABA05730.24 BA05
0897bzg_K_DG13_DG14BBBBB01210.27 BB01
0907bzg_K_DG14_DA15miBBB15310.39 BB15
0917bzg_K_DA15_DT16B-ABA05630.27 BA05
0927bzg_K_DT16_DA17BBBBB00310.25 BB00
0937bzg_K_DA17_DC18BBBBB01900.15 BB01
0947bzg_K_DC18_DT19BBBBB00570.34 BB00
0957bzg_K_DT19_DG20BB2BB07650.25 BB07
0967bzg_L_DC1_DA2BBBBB00800.33 BB00
0977bzg_L_DA2_DG3B-ABA09750.27 BA09
0987bzg_L_DG3_DT4NANNANT00.79 IC03
0997bzg_L_DT4_DA5BBBBB00210.35 BB00
1007bzg_L_DA5_DT6BBwBB02720.25 BB02
1017bzg_L_DT6_DC7BBBBB00530.31 BB00
1027bzg_L_DC7_DC8BBBBB00380.26 BB00
1037bzg_L_DC8_DT9B12BB04480.31 BB04
1047bzg_L_DT9_DC10miBBB10380.24 BB10
1057bzg_L_DC10_DG11BB2BB07580.23 BB07
1067bzg_L_DG11_DA12BB2BB07770.21 BB07
1077bzg_L_DA12_DG13B-ABA05520.29 BA05
1087bzg_L_DG13_DG14BBBBB00170.23 BB00
1097bzg_L_DG14_DA15NANNANT00.46 BB15
1107bzg_L_DA15_DT16B-ABA05810.21 BA05
1117bzg_L_DT16_DA17BBBBB01660.23 BB01
1127bzg_L_DA17_DC18BBBBB01600.19 BB01
1137bzg_L_DC18_DT19BBBBB00460.41 BB00
1147bzg_L_DT19_DG20BB2BB07700.30 BB07

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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