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Conformers: ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
Crystal structure of helicase Pif1 from Thermus oshimai in complex with oligo GGTTTGGTTTGGTT

Results of the assignment of 13 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
017bil_C_DG1_DG2NANNANT01.22 AB02
027bil_C_DG2_DT3NANNANT00.80 BA17
037bil_C_DT3_DT4NANNANT00.63 AA02
047bil_C_DT4_DT5AAAAA02480.40 AA02
057bil_C_DT5_DG6NANNANT00.50 AB04
067bil_C_DG6_DG7NANNANT00.72 AA07
077bil_C_DG7_DT8NANNANT01.47 IC07
087bil_C_DT8_DT9NANNANT01.68 AA13
097bil_C_DT9_DT10NANNANT00.82 OPS1
107bil_C_DT10_DG11NANNANT00.52 AA02
117bil_C_DG11_DG12AAAAA02310.30 AA02
127bil_C_DG12_DT13NANNANT00.90 BB2S
137bil_C_DT13_DT14NANNANT01.21 OP07

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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