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Conformers: ABBIImiBZICOPNSYNN
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deoxyxylose nucleic acid hairpin

Results of the assignment of 190 detected steps in 10 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
0017bfx-m10_A_DA1_DG2NANNANT00.97 AA01
0027bfx-m1_A_DA1_DG2NANNANT01.02 AA01
0037bfx-m2_A_DA1_DG2NANNANT02.18 OP27
0047bfx-m3_A_DA1_DG2NANNANT00.91 AA01
0057bfx-m4_A_DA1_DG2NANNANT00.92 AA01
0067bfx-m5_A_DA1_DG2NANNANT00.95 AA01
0077bfx-m6_A_DA1_DG2NANNANT00.93 AA01
0087bfx-m7_A_DA1_DG2NANNANT01.02 AA01
0097bfx-m8_A_DA1_DG2NANNANT01.04 AA01
0107bfx-m9_A_DA1_DG2NANNANT00.94 AA01
0117bfx-m10_A_DG2_DC3NANNANT01.14 AA01
0127bfx-m1_A_DG2_DC3NANNANT01.09 AA01
0137bfx-m2_A_DG2_DC3NANNANT02.21 OP27
0147bfx-m3_A_DG2_DC3NANNANT02.23 OP27
0157bfx-m4_A_DG2_DC3NANNANT01.17 AA01
0167bfx-m5_A_DG2_DC3NANNANT02.18 OP27
0177bfx-m6_A_DG2_DC3NANNANT01.84 ZZ01
0187bfx-m7_A_DG2_DC3NANNANT02.22 OP27
0197bfx-m8_A_DG2_DC3NANNANT01.78 ZZ01
0207bfx-m9_A_DG2_DC3NANNANT01.04 AA01
0217bfx-m10_A_DC3_DA4NANNANT00.91 AA01
0227bfx-m1_A_DC3_DA4NANNANT02.21 OP27
0237bfx-m2_A_DC3_DA4NANNANT00.92 AA01
0247bfx-m3_A_DC3_DA4NANNANT02.14 OP27
0257bfx-m4_A_DC3_DA4NANNANT02.18 OP27
0267bfx-m5_A_DC3_DA4NANNANT00.80 AA01
0277bfx-m6_A_DC3_DA4NANNANT02.16 OP27
0287bfx-m7_A_DC3_DA4NANNANT02.24 OP27
0297bfx-m8_A_DC3_DA4NANNANT02.19 OP27
0307bfx-m9_A_DC3_DA4NANNANT00.99 AA01
0317bfx-m10_A_DA4_DA5NANNANT00.97 AA01
0327bfx-m1_A_DA4_DA5NANNANT02.21 OP27
0337bfx-m2_A_DA4_DA5NANNANT01.33 AA11
0347bfx-m3_A_DA4_DA5NANNANT00.96 AA01
0357bfx-m4_A_DA4_DA5NANNANT01.02 AA01
0367bfx-m5_A_DA4_DA5NANNANT02.14 OP27
0377bfx-m6_A_DA4_DA5NANNANT02.10 OP27
0387bfx-m7_A_DA4_DA5NANNANT00.96 AA01
0397bfx-m8_A_DA4_DA5NANNANT02.26 OP27
0407bfx-m9_A_DA4_DA5NANNANT02.15 OP27
0417bfx-m10_A_DA5_DT6NANNANT00.80 AA01
0427bfx-m1_A_DA5_DT6NANNANT00.78 AA01
0437bfx-m2_A_DA5_DT6NANNANT00.74 AA01
0447bfx-m3_A_DA5_DT6NANNANT00.83 AA01
0457bfx-m4_A_DA5_DT6NANNANT00.80 AA01
0467bfx-m5_A_DA5_DT6NANNANT00.77 AA01
0477bfx-m6_A_DA5_DT6NANNANT00.78 AA01
0487bfx-m7_A_DA5_DT6NANNANT00.81 AA01
0497bfx-m8_A_DA5_DT6NANNANT00.74 AA01
0507bfx-m9_A_DA5_DT6NANNANT00.78 AA01
0517bfx-m10_A_DT6_DC7NANNANT02.13 OP27
0527bfx-m1_A_DT6_DC7NANNANT02.08 OP05
0537bfx-m2_A_DT6_DC7NANNANT02.04 OP31
0547bfx-m3_A_DT6_DC7NANNANT01.03 AA01
0557bfx-m4_A_DT6_DC7NANNANT02.17 OP05
0567bfx-m5_A_DT6_DC7NANNANT02.06 OP31
0577bfx-m6_A_DT6_DC7NANNANT01.02 AA01
0587bfx-m7_A_DT6_DC7NANNANT02.13 OP05
0597bfx-m8_A_DT6_DC7NANNANT01.05 AA01
0607bfx-m9_A_DT6_DC7NANNANT01.06 AA01
0617bfx-m10_A_DC7_DC8NANNANT01.01 AA01
0627bfx-m1_A_DC7_DC8NANNANT00.91 AA01
0637bfx-m2_A_DC7_DC8NANNANT00.84 AA01
0647bfx-m3_A_DC7_DC8NANNANT02.19 OP27
0657bfx-m4_A_DC7_DC8NANNANT00.75 AA01
0667bfx-m5_A_DC7_DC8NANNANT00.92 AA01
0677bfx-m6_A_DC7_DC8NANNANT02.16 OP27
0687bfx-m7_A_DC7_DC8NANNANT00.80 AA01
0697bfx-m8_A_DC7_DC8NANNANT00.92 AA01
0707bfx-m9_A_DC7_DC8NANNANT00.93 AA01
0717bfx-m10_A_DC8_DC9NANNANT00.85 AA01
0727bfx-m1_A_DC8_DC9NANNANT00.89 AA04
0737bfx-m2_A_DC8_DC9NANNANT00.69 AA01
0747bfx-m3_A_DC8_DC9NANNANT00.84 AA04
0757bfx-m4_A_DC8_DC9NANNANT00.56 AA04
0767bfx-m5_A_DC8_DC9NANNANT01.47 AA01
0777bfx-m6_A_DC8_DC9NANNANT00.83 AA01
0787bfx-m7_A_DC8_DC9NANNANT00.71 AA04
0797bfx-m8_A_DC8_DC9NANNANT00.98 AA01
0807bfx-m9_A_DC8_DC9NANNANT00.80 AA01
0817bfx-m10_A_DC9_DC10NANNANT01.16 AA01
0827bfx-m1_A_DC9_DC10NANNANT01.14 AA01
0837bfx-m2_A_DC9_DC10NANNANT01.09 AA01
0847bfx-m3_A_DC9_DC10NANNANT00.90 AA01
0857bfx-m4_A_DC9_DC10NANNANT01.03 AA01
0867bfx-m5_A_DC9_DC10NANNANT00.50 AA04
0877bfx-m6_A_DC9_DC10NANNANT01.10 AA01
0887bfx-m7_A_DC9_DC10NANNANT01.21 AA01
0897bfx-m8_A_DC9_DC10NANNANT01.00 AA01
0907bfx-m9_A_DC9_DC10NANNANT01.13 AA01
0917bfx-m10_A_DC10_DC11NANNANT01.18 AA01
0927bfx-m1_A_DC10_DC11NANNANT01.30 AA01
0937bfx-m2_A_DC10_DC11NANNANT01.08 AA01
0947bfx-m3_A_DC10_DC11NANNANT01.31 AA01
0957bfx-m4_A_DC10_DC11NANNANT01.50 AA01
0967bfx-m5_A_DC10_DC11NANNANT01.02 AA01
0977bfx-m6_A_DC10_DC11NANNANT01.31 AA01
0987bfx-m7_A_DC10_DC11NANNANT01.22 AA01
0997bfx-m8_A_DC10_DC11NANNANT01.32 AA01
1007bfx-m9_A_DC10_DC11NANNANT01.24 AA01
1017bfx-m10_A_DC11_DC12NANNANT02.34 OP19
1027bfx-m1_A_DC11_DC12NANNANT01.39 AA01
1037bfx-m2_A_DC11_DC12NANNANT02.32 OP08
1047bfx-m3_A_DC11_DC12NANNANT00.70 AA01
1057bfx-m4_A_DC11_DC12NANNANT01.02 AA01
1067bfx-m5_A_DC11_DC12NANNANT02.13 OP08
1077bfx-m6_A_DC11_DC12NANNANT02.41 OP27
1087bfx-m7_A_DC11_DC12NANNANT01.99 OP31
1097bfx-m8_A_DC11_DC12NANNANT02.51 OP27
1107bfx-m9_A_DC11_DC12NANNANT01.94 OP31
1117bfx-m10_A_DC12_DG13NANNANT01.73 OP31
1127bfx-m1_A_DC12_DG13NANNANT02.04 OP29
1137bfx-m2_A_DC12_DG13NANNANT01.10 AA01
1147bfx-m3_A_DC12_DG13NANNANT01.80 OP24
1157bfx-m4_A_DC12_DG13NANNANT01.69 OP01
1167bfx-m5_A_DC12_DG13NANNANT00.93 AA01
1177bfx-m6_A_DC12_DG13NANNANT01.77 OP24
1187bfx-m7_A_DC12_DG13NANNANT00.95 AA05
1197bfx-m8_A_DC12_DG13NANNANT01.83 OP24
1207bfx-m9_A_DC12_DG13NANNANT00.78 AA05
1217bfx-m10_A_DG13_DG14NANNANT00.96 AA01
1227bfx-m1_A_DG13_DG14NANNANT00.88 AA01
1237bfx-m2_A_DG13_DG14NANNANT00.77 AA01
1247bfx-m3_A_DG13_DG14NANNANT01.08 AA01
1257bfx-m4_A_DG13_DG14NANNANT00.77 AA01
1267bfx-m5_A_DG13_DG14NANNANT00.85 AA01
1277bfx-m6_A_DG13_DG14NANNANT00.99 AA01
1287bfx-m7_A_DG13_DG14NANNANT00.79 AA01
1297bfx-m8_A_DG13_DG14NANNANT00.83 AA10
1307bfx-m9_A_DG13_DG14NANNANT00.83 AA01
1317bfx-m10_A_DG14_DA15NANNANT02.37 OP27
1327bfx-m1_A_DG14_DA15NANNANT02.20 OP27
1337bfx-m2_A_DG14_DA15NANNANT01.07 AA01
1347bfx-m3_A_DG14_DA15NANNANT01.07 AA01
1357bfx-m4_A_DG14_DA15NANNANT01.08 AA01
1367bfx-m5_A_DG14_DA15NANNANT02.36 OP27
1377bfx-m6_A_DG14_DA15NANNANT01.08 AA01
1387bfx-m7_A_DG14_DA15NANNANT02.40 OP27
1397bfx-m8_A_DG14_DA15NANNANT02.38 OP05
1407bfx-m9_A_DG14_DA15NANNANT02.34 OP27
1417bfx-m10_A_DA15_DT16NANNANT00.96 AA01
1427bfx-m1_A_DA15_DT16NANNANT00.85 AA01
1437bfx-m2_A_DA15_DT16NANNANT00.93 AA01
1447bfx-m3_A_DA15_DT16NANNANT00.81 AA01
1457bfx-m4_A_DA15_DT16NANNANT00.87 AA01
1467bfx-m5_A_DA15_DT16NANNANT00.85 AA01
1477bfx-m6_A_DA15_DT16NANNANT00.81 AA01
1487bfx-m7_A_DA15_DT16NANNANT00.97 AA01
1497bfx-m8_A_DA15_DT16NANNANT00.90 AA01
1507bfx-m9_A_DA15_DT16NANNANT00.94 AA01
1517bfx-m10_A_DT16_DT17NANNANT02.08 OP27
1527bfx-m1_A_DT16_DT17NANNANT01.05 AA01
1537bfx-m2_A_DT16_DT17NANNANT02.12 OP27
1547bfx-m3_A_DT16_DT17NANNANT01.08 AA01
1557bfx-m4_A_DT16_DT17NANNANT02.17 OP27
1567bfx-m5_A_DT16_DT17NANNANT02.18 OP27
1577bfx-m6_A_DT16_DT17NANNANT02.19 OP27
1587bfx-m7_A_DT16_DT17NANNANT02.11 OP27
1597bfx-m8_A_DT16_DT17NANNANT02.10 OP27
1607bfx-m9_A_DT16_DT17NANNANT01.00 AA01
1617bfx-m10_A_DT17_DG18NANNANT00.91 AA01
1627bfx-m1_A_DT17_DG18NANNANT02.14 OP27
1637bfx-m2_A_DT17_DG18NANNANT00.87 AA01
1647bfx-m3_A_DT17_DG18NANNANT00.91 AA01
1657bfx-m4_A_DT17_DG18NANNANT00.88 AA01
1667bfx-m5_A_DT17_DG18NANNANT00.89 AA01
1677bfx-m6_A_DT17_DG18NANNANT02.18 OP27
1687bfx-m7_A_DT17_DG18NANNANT00.95 AA01
1697bfx-m8_A_DT17_DG18NANNANT00.89 AA01
1707bfx-m9_A_DT17_DG18NANNANT00.94 AA01
1717bfx-m10_A_DG18_DC19NANNANT02.20 OP27
1727bfx-m1_A_DG18_DC19NANNANT01.03 AA01
1737bfx-m2_A_DG18_DC19NANNANT02.20 OP27
1747bfx-m3_A_DG18_DC19NANNANT01.12 AA01
1757bfx-m4_A_DG18_DC19NANNANT01.95 ZZ01
1767bfx-m5_A_DG18_DC19NANNANT01.83 ZZ01
1777bfx-m6_A_DG18_DC19NANNANT01.02 AA01
1787bfx-m7_A_DG18_DC19NANNANT02.15 OP27
1797bfx-m8_A_DG18_DC19NANNANT01.04 AA01
1807bfx-m9_A_DG18_DC19NANNANT01.07 AA01
1817bfx-m10_A_DC19_DT20NANNANT02.42 OP05
1827bfx-m1_A_DC19_DT20NANNANT02.16 OP27
1837bfx-m2_A_DC19_DT20NANNANT02.20 OP27
1847bfx-m3_A_DC19_DT20NANNANT00.88 AA01
1857bfx-m4_A_DC19_DT20NANNANT02.35 OP27
1867bfx-m5_A_DC19_DT20NANNANT02.26 OP27
1877bfx-m6_A_DC19_DT20NANNANT02.23 OP27
1887bfx-m7_A_DC19_DT20NANNANT02.25 OP27
1897bfx-m8_A_DC19_DT20NANNANT02.21 OP05
1907bfx-m9_A_DC19_DT20NANNANT02.34 OP05

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

Browse conformers

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