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Conformers: ABBIImiBZICOPNSYNN
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deoxyxylose nucleic acid hairpin

Results of the assignment of 140 detected steps in 10 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
0017bfs-m10_A_DA1_DG2A-BAB01330.30 AB01
0027bfs-m1_A_DA1_DG2BBBBB00840.27 BB00
0037bfs-m2_A_DA1_DG2BBBBB00620.41 BB00
0047bfs-m3_A_DA1_DG2BBBBB00460.51 BB00
0057bfs-m4_A_DA1_DG2NANNANT00.53 BB17
0067bfs-m5_A_DA1_DG2BBBBB00810.33 BB00
0077bfs-m6_A_DA1_DG2BBBBB00530.50 BB00
0087bfs-m7_A_DA1_DG2BBBBB00620.44 BB00
0097bfs-m8_A_DA1_DG2BBBBB00430.40 BB00
0107bfs-m9_A_DA1_DG2A-BAB01370.26 AB01
0117bfs-m10_A_DG2_DC3BBBBB00880.17 BB00
0127bfs-m1_A_DG2_DC3BBBBB01250.36 BB01
0137bfs-m2_A_DG2_DC3BBBBB00370.29 BB00
0147bfs-m3_A_DG2_DC3BBBBB00100.42 BB00
0157bfs-m4_A_DG2_DC3BBBBB00470.33 BB00
0167bfs-m5_A_DG2_DC3BBBBB00890.24 BB00
0177bfs-m6_A_DG2_DC3BBBBB00570.37 BB00
0187bfs-m7_A_DG2_DC3BBBBB00570.29 BB00
0197bfs-m8_A_DG2_DC3BBBBB00630.23 BB00
0207bfs-m9_A_DG2_DC3BBBBB00660.21 BB00
0217bfs-m10_A_DC3_DA4BBBBB00270.40 BB00
0227bfs-m1_A_DC3_DA4BBBBB00310.26 BB00
0237bfs-m2_A_DC3_DA4BBBBB00570.28 BB00
0247bfs-m3_A_DC3_DA4BBBBB00140.39 BB00
0257bfs-m4_A_DC3_DA4BBBBB00420.40 BB00
0267bfs-m5_A_DC3_DA4BBBBB00640.33 BB00
0277bfs-m6_A_DC3_DA4BBBBB00650.35 BB00
0287bfs-m7_A_DC3_DA4BBBBB00540.38 BB00
0297bfs-m8_A_DC3_DA4BBBBB00240.42 BB00
0307bfs-m9_A_DC3_DA4BBBBB00860.24 BB00
0317bfs-m10_A_DA4_DA5BBBBB00500.37 BB00
0327bfs-m1_A_DA4_DA5BBBBB00590.19 BB00
0337bfs-m2_A_DA4_DA5NANNANT00.42 BB00
0347bfs-m3_A_DA4_DA5BBBBB00510.29 BB00
0357bfs-m4_A_DA4_DA5BBBBB00330.34 BB00
0367bfs-m5_A_DA4_DA5BBBBB01400.21 BB01
0377bfs-m6_A_DA4_DA5BBBBB01600.21 BB01
0387bfs-m7_A_DA4_DA5BBBBB00500.25 BB00
0397bfs-m8_A_DA4_DA5BBBBB00410.40 BB00
0407bfs-m9_A_DA4_DA5BBBBB00540.24 BB00
0417bfs-m10_A_DA5_DT6BBBBB01850.17 BB01
0427bfs-m1_A_DA5_DT6BBBBB00700.17 BB00
0437bfs-m2_A_DA5_DT6BBBBB01840.16 BB01
0447bfs-m3_A_DA5_DT6BBBBB01620.30 BB01
0457bfs-m4_A_DA5_DT6B-ABA05510.13 BA05
0467bfs-m5_A_DA5_DT6BBBBB00520.23 BB00
0477bfs-m6_A_DA5_DT6BBBBB01670.18 BB01
0487bfs-m7_A_DA5_DT6BBBBB00700.24 BB00
0497bfs-m8_A_DA5_DT6B-ABA05760.16 BA05
0507bfs-m9_A_DA5_DT6BBBBB01750.16 BB01
0517bfs-m10_A_DT6_DC7BBBBB00510.30 BB00
0527bfs-m1_A_DT6_DC7BBBBB01850.12 BB01
0537bfs-m2_A_DT6_DC7BBBBB01540.20 BB01
0547bfs-m3_A_DT6_DC7BBBBB01530.23 BB01
0557bfs-m4_A_DT6_DC7AAAAA02420.42 AA02
0567bfs-m5_A_DT6_DC7BBBBB00730.31 BB00
0577bfs-m6_A_DT6_DC7BBBBB00690.21 BB00
0587bfs-m7_A_DT6_DC7BBBBB01710.18 BB01
0597bfs-m8_A_DT6_DC7BBBBB01370.26 BB01
0607bfs-m9_A_DT6_DC7BBBBB01410.28 BB01
0617bfs-m10_A_DC7_DC8B-ABA05280.32 BA05
0627bfs-m1_A_DC7_DC8BBBBB01790.27 BB01
0637bfs-m2_A_DC7_DC8BBBBB01570.31 BB01
0647bfs-m3_A_DC7_DC8A-BAB03110.54 AB03
0657bfs-m4_A_DC7_DC8BBBBB01430.35 BB01
0667bfs-m5_A_DC7_DC8BBBBB00140.43 BB00
0677bfs-m6_A_DC7_DC8BBBBB00760.35 BB00
0687bfs-m7_A_DC7_DC8B-ABA05460.27 BA05
0697bfs-m8_A_DC7_DC8B-ABA05490.26 BA05
0707bfs-m9_A_DC7_DC8BBBBB01550.38 BB01
0717bfs-m10_A_DG13_DG14BB2BB07660.36 BB07
0727bfs-m1_A_DG13_DG14BBBBB00390.43 BB00
0737bfs-m2_A_DG13_DG14B12BB04800.37 BB04
0747bfs-m3_A_DG13_DG14BB2BB07530.43 BB07
0757bfs-m4_A_DG13_DG14B12BB04240.37 BB04
0767bfs-m5_A_DG13_DG14BBBBB00700.32 BB00
0777bfs-m6_A_DG13_DG14B12BB04470.26 BB04
0787bfs-m7_A_DG13_DG14BB2BB07450.35 BB07
0797bfs-m8_A_DG13_DG14BB2BB07260.43 BB07
0807bfs-m9_A_DG13_DG14BB2BB07860.26 BB07
0817bfs-m10_A_DG14_DA15BBBBB00690.36 BB00
0827bfs-m1_A_DG14_DA15BBBBB00600.32 BB00
0837bfs-m2_A_DG14_DA15BBBBB00340.34 BB00
0847bfs-m3_A_DG14_DA15BBBBB00720.19 BB00
0857bfs-m4_A_DG14_DA15BBBBB00770.25 BB00
0867bfs-m5_A_DG14_DA15BBBBB00260.36 BB00
0877bfs-m6_A_DG14_DA15BBBBB00800.19 BB00
0887bfs-m7_A_DG14_DA15miBBB15560.35 BB15
0897bfs-m8_A_DG14_DA15BBBBB00540.37 BB00
0907bfs-m9_A_DG14_DA15BBBBB00730.21 BB00
0917bfs-m10_A_DA15_DT16BBBBB00730.26 BB00
0927bfs-m1_A_DA15_DT16BBBBB01670.25 BB01
0937bfs-m2_A_DA15_DT16BBBBB01570.27 BB01
0947bfs-m3_A_DA15_DT16BBBBB01540.18 BB01
0957bfs-m4_A_DA15_DT16BBBBB00330.24 BB00
0967bfs-m5_A_DA15_DT16BBBBB01740.27 BB01
0977bfs-m6_A_DA15_DT16BBBBB01720.24 BB01
0987bfs-m7_A_DA15_DT16BBBBB01660.28 BB01
0997bfs-m8_A_DA15_DT16BBBBB01630.26 BB01
1007bfs-m9_A_DA15_DT16BBBBB01760.20 BB01
1017bfs-m10_A_DT16_DT17NANNANT00.41 BA08
1027bfs-m1_A_DT16_DT17BBBBB00100.34 BB00
1037bfs-m2_A_DT16_DT17BBBBB00420.27 BB00
1047bfs-m3_A_DT16_DT17BBBBB01740.18 BB01
1057bfs-m4_A_DT16_DT17BBBBB01810.14 BB01
1067bfs-m5_A_DT16_DT17BBBBB01370.22 BB01
1077bfs-m6_A_DT16_DT17B-ABA05680.20 BA05
1087bfs-m7_A_DT16_DT17BBBBB00670.21 BB00
1097bfs-m8_A_DT16_DT17BBBBB00710.29 BB00
1107bfs-m9_A_DT16_DT17BBBBB01770.14 BB01
1117bfs-m10_A_DT17_DG18NANNANT00.37 BB17
1127bfs-m1_A_DT17_DG18NANNANT00.40 BB15
1137bfs-m2_A_DT17_DG18NANNANT00.44 BB17
1147bfs-m3_A_DT17_DG18NANNANT00.50 BB17
1157bfs-m4_A_DT17_DG18BBBBB00760.23 BB00
1167bfs-m5_A_DT17_DG18BBBBB00130.45 BB00
1177bfs-m6_A_DT17_DG18BBBBB00130.44 BB00
1187bfs-m7_A_DT17_DG18BBBBB00310.47 BB00
1197bfs-m8_A_DT17_DG18BBBBB00380.28 BB00
1207bfs-m9_A_DT17_DG18BBBBB00810.23 BB00
1217bfs-m10_A_DG18_DC19BBBBB00270.34 BB00
1227bfs-m1_A_DG18_DC19BBBBB00530.33 BB00
1237bfs-m2_A_DG18_DC19BBBBB00790.28 BB00
1247bfs-m3_A_DG18_DC19BBBBB00350.30 BB00
1257bfs-m4_A_DG18_DC19BBBBB00760.23 BB00
1267bfs-m5_A_DG18_DC19NANNANT00.48 BB14
1277bfs-m6_A_DG18_DC19BBBBB00740.21 BB00
1287bfs-m7_A_DG18_DC19BBBBB00730.24 BB00
1297bfs-m8_A_DG18_DC19BBBBB00810.23 BB00
1307bfs-m9_A_DG18_DC19BBBBB00540.25 BB00
1317bfs-m10_A_DC19_DT20BBBBB00710.32 BB00
1327bfs-m1_A_DC19_DT20BBBBB00600.32 BB00
1337bfs-m2_A_DC19_DT20B12BB04340.31 BB04
1347bfs-m3_A_DC19_DT20BBBBB00260.30 BB00
1357bfs-m4_A_DC19_DT20B12BB04330.24 BB04
1367bfs-m5_A_DC19_DT20B-ABA05540.34 BA05
1377bfs-m6_A_DC19_DT20BBBBB00310.27 BB00
1387bfs-m7_A_DC19_DT20BBBBB01750.28 BB01
1397bfs-m8_A_DC19_DT20BBBBB00760.19 BB00
1407bfs-m9_A_DC19_DT20BBBBB00800.24 BB00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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