Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
DtxR-like iron-dependent regulator IdeR (P39G variant) complexed with cobalt and its consensus DNA-binding sequence
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 56 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 7b24_E_DG2_DT3 | BBB | BB01 | 45 | 0.32 |
| 02 | 7b24_E_DT3_DG4 | BBB | BB01 | 24 | 0.34 |
| 03 | 7b24_E_DG4_DA5 | BBB | BB00 | 96 | 0.10 |
| 04 | 7b24_E_DA5_DC6 | NAN | NANT | 0 | 0.27 |
| 05 | 7b24_E_DC6_DT7 | BBB | BB00 | 80 | 0.19 |
| 06 | 7b24_E_DT7_DT8 | BBB | BB00 | 88 | 0.13 |
| 07 | 7b24_E_DT8_DA9 | miB | BB10 | 57 | 0.23 |
| 08 | 7b24_E_DA9_DG10 | BBB | BB00 | 90 | 0.17 |
| 09 | 7b24_E_DG10_DG11 | B-A | BA10 | 75 | 0.27 |
| 10 | 7b24_E_DG11_DT12 | A-B | AB04 | 63 | 0.29 |
| 11 | 7b24_E_DT12_DT13 | B-A | BA05 | 13 | 0.19 |
| 12 | 7b24_E_DT13_DA14 | A-B | AB03 | 83 | 0.20 |
| 13 | 7b24_E_DA14_DG15 | BBB | BB00 | 83 | 0.21 |
| 14 | 7b24_E_DG15_DC16 | NAN | NANT | 0 | 0.41 |
| 15 | 7b24_E_DC16_DC17 | AAA | AA08 | 70 | 0.21 |
| 16 | 7b24_E_DC17_DT18 | A-B | AB05 | 85 | 0.24 |
| 17 | 7b24_E_DT18_DA19 | BBB | BB00 | 94 | 0.13 |
| 18 | 7b24_E_DA19_DA20 | BBB | BB00 | 77 | 0.20 |
| 19 | 7b24_E_DA20_DC21 | NAN | NANT | 0 | 0.41 |
| 20 | 7b24_E_DC21_DC22 | AAA | AA08 | 63 | 0.25 |
| 21 | 7b24_E_DC22_DT23 | A-B | AB05 | 45 | 0.18 |
| 22 | 7b24_E_DT23_DA24 | BBB | BB01 | 82 | 0.24 |
| 23 | 7b24_E_DA24_DA25 | BBB | BB00 | 72 | 0.15 |
| 24 | 7b24_E_DA25_DG26 | B-A | BA09 | 45 | 0.25 |
| 25 | 7b24_E_DG26_DT27 | A-B | AB04 | 15 | 0.43 |
| 26 | 7b24_E_DT27_DA28 | BBw | BB02 | 22 | 0.34 |
| 27 | 7b24_E_DA28_DC29 | BBB | BB00 | 84 | 0.14 |
| 28 | 7b24_E_DC29_DG30 | miB | BB10 | 85 | 0.17 |
| 29 | 7b24_F_DC1_DG2 | NAN | NANT | 0 | 0.34 |
| 30 | 7b24_F_DG2_DT3 | BBB | BB00 | 72 | 0.32 |
| 31 | 7b24_F_DT3_DA4 | BBB | BB00 | 92 | 0.11 |
| 32 | 7b24_F_DA4_DC5 | B-A | BA05 | 85 | 0.23 |
| 33 | 7b24_F_DC5_DT6 | A-B | AB01 | 22 | 0.37 |
| 34 | 7b24_F_DT6_DT7 | BBB | BB00 | 86 | 0.15 |
| 35 | 7b24_F_DT7_DA8 | BBB | BB00 | 69 | 0.22 |
| 36 | 7b24_F_DA8_DG9 | BBB | BB00 | 77 | 0.15 |
| 37 | 7b24_F_DG9_DG10 | B-A | BA05 | 64 | 0.26 |
| 38 | 7b24_F_DG10_DT11 | A-B | AB01 | 34 | 0.36 |
| 39 | 7b24_F_DT11_DT12 | BBB | BB01 | 47 | 0.17 |
| 40 | 7b24_F_DT12_DA13 | A-B | AB03 | 88 | 0.20 |
| 41 | 7b24_F_DA13_DG14 | BBB | BB00 | 89 | 0.21 |
| 42 | 7b24_F_DG14_DG15 | B-A | BA13 | 56 | 0.29 |
| 43 | 7b24_F_DG15_DC16 | AAA | AA00 | 73 | 0.17 |
| 44 | 7b24_F_DC16_DT17 | A-B | AB05 | 82 | 0.25 |
| 45 | 7b24_F_DT17_DA18 | BBB | BB00 | 94 | 0.12 |
| 46 | 7b24_F_DA18_DA19 | BBB | BB00 | 64 | 0.21 |
| 47 | 7b24_F_DA19_DC20 | NAN | NANT | 0 | 0.41 |
| 48 | 7b24_F_DC20_DC21 | AAA | AA08 | 65 | 0.24 |
| 49 | 7b24_F_DC21_DT22 | A-B | AB05 | 60 | 0.17 |
| 50 | 7b24_F_DT22_DA23 | BBB | BB00 | 76 | 0.27 |
| 51 | 7b24_F_DA23_DA24 | B12 | BB05 | 63 | 0.20 |
| 52 | 7b24_F_DA24_DG25 | BBB | BB00 | 54 | 0.32 |
| 53 | 7b24_F_DG25_DT26 | BBB | BB00 | 76 | 0.23 |
| 54 | 7b24_F_DT26_DC27 | BBB | BB00 | 66 | 0.18 |
| 55 | 7b24_F_DC27_DA28 | B12 | BB04 | 94 | 0.19 |
| 56 | 7b24_F_DA28_DC29 | BBB | BB01 | 66 | 0.21 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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