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Conformers: ABBIImiBZICOPNSYNN
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DtxR-like iron-dependent regulator IdeR complexed with cobalt and its consensus DNA-binding sequence

Results of the assignment of 56 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
017b1y_E_DG1_DT2B12BB04200.29 BB04
027b1y_E_DT2_DG3BBBBB00810.16 BB00
037b1y_E_DG3_DA4BBBBB00940.12 BB00
047b1y_E_DA4_DC5BBBBB01510.19 BB01
057b1y_E_DC5_DT6BBBBB01180.36 BB01
067b1y_E_DT6_DT7BBBBB00740.13 BB00
077b1y_E_DT7_DA8BBBBB01760.23 BB01
087b1y_E_DA8_DG9BBBBB00640.20 BB00
097b1y_E_DG9_DG10B-ABA10680.31 BA10
107b1y_E_DG10_DT11AAAAA00670.25 AA00
117b1y_E_DT11_DT12A-BAB01760.21 AB01
127b1y_E_DT12_DA13BBBBB00950.09 BB00
137b1y_E_DA13_DG14BBBBB00760.25 BB00
147b1y_E_DG14_DC15B-ABA16660.22 BA16
157b1y_E_DC15_DC16AAAAA00960.22 AA00
167b1y_E_DC16_DT17A-BAB05830.26 AB05
177b1y_E_DT17_DA18BBBBB00960.10 BB00
187b1y_E_DA18_DA19BBBBB00750.26 BB00
197b1y_E_DA19_DC20NANNANT00.52 BA09
207b1y_E_DC20_DC21AAAAA00720.23 AA00
217b1y_E_DC21_DT22A-BAB05520.24 AB05
227b1y_E_DT22_DA23miBBB15220.31 BB15
237b1y_E_DA23_DA24BBBBB00940.12 BB00
247b1y_E_DA24_DG25B-ABA09460.26 BA09
257b1y_E_DG25_DT26A-BAB05510.23 AB05
267b1y_E_DT26_DA27BBBBB00720.28 BB00
277b1y_E_DA27_DC28BBBBB00790.17 BB00
287b1y_E_DC28_DG29miBBB10620.28 BB10
297b1y_F_DC1_DG2NANNANT00.41 BB07
307b1y_F_DG2_DT3BBBBB00770.26 BB00
317b1y_F_DT3_DA4BBBBB01940.12 BB01
327b1y_F_DA4_DC5B-ABA05940.20 BA05
337b1y_F_DC5_DT6BBBBB01150.36 BB01
347b1y_F_DT6_DT7BBBBB00910.13 BB00
357b1y_F_DT7_DA8BBBBB01780.22 BB01
367b1y_F_DA8_DG9BBBBB00690.20 BB00
377b1y_F_DG9_DG10B-ABA09570.16 BA09
387b1y_F_DG10_DT11AAAAA00490.30 AA00
397b1y_F_DT11_DT12A-BAB01770.20 AB01
407b1y_F_DT12_DA13BBBBB00970.09 BB00
417b1y_F_DA13_DG14BBBBB00820.24 BB00
427b1y_F_DG14_DG15B-ABA16650.22 BA16
437b1y_F_DG15_DC16AAAAA00960.19 AA00
447b1y_F_DC16_DT17A-BAB05850.25 AB05
457b1y_F_DT17_DA18BBBBB00950.10 BB00
467b1y_F_DA18_DA19BBBBB00740.26 BB00
477b1y_F_DA19_DC20NANNANT00.51 BA09
487b1y_F_DC20_DC21AAAAA00580.23 AA00
497b1y_F_DC21_DT22A-BAB05300.23 AB05
507b1y_F_DT22_DA23BBBBB00710.16 BB00
517b1y_F_DA23_DA24BBBBB00950.10 BB00
527b1y_F_DA24_DG25B-ABA09260.32 BA09
537b1y_F_DG25_DT26A-BAB05500.23 AB05
547b1y_F_DT26_DC27BBBBB00650.26 BB00
557b1y_F_DC27_DA28BBBBB00660.16 BB00
567b1y_F_DA28_DC29BB2BB08840.37 BB08

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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