Conformers:
ABBIImiBZICOPNSYNN
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[4Fe-4S]-NsrR complexed to 23-bp HmpA1 operator fragment
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 44 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 7b0c_C_DA1_DA2 | NAN | NANT | 0 | 0.47 |
| 02 | 7b0c_C_DA2_DC3 | A-B | AB01 | 49 | 0.26 |
| 03 | 7b0c_C_DC3_DA4 | BBB | BB00 | 71 | 0.25 |
| 04 | 7b0c_C_DA4_DC5 | B12 | BB04 | 42 | 0.38 |
| 05 | 7b0c_C_DC5_DG6 | B12 | BB04 | 27 | 0.22 |
| 06 | 7b0c_C_DG6_DA7 | BBB | BB00 | 53 | 0.36 |
| 07 | 7b0c_C_DA7_DA8 | miB | BB13 | 81 | 0.20 |
| 08 | 7b0c_C_DA8_DT9 | BBw | BB16 | 70 | 0.55 |
| 09 | 7b0c_C_DT9_DA10 | BBB | BB00 | 78 | 0.25 |
| 10 | 7b0c_C_DA10_DT11 | BBB | BB00 | 32 | 0.16 |
| 11 | 7b0c_C_DT11_DC12 | B12 | BB04 | 18 | 0.35 |
| 12 | 7b0c_C_DC12_DA13 | BB2 | BB07 | 30 | 0.19 |
| 13 | 7b0c_C_DA13_DT14 | B12 | BB04 | 53 | 0.35 |
| 14 | 7b0c_C_DT14_DC15 | BB2 | BB07 | 28 | 0.47 |
| 15 | 7b0c_C_DC15_DT16 | B-A | BA05 | 75 | 0.24 |
| 16 | 7b0c_C_DT16_DA17 | A-B | AB03 | 80 | 0.28 |
| 17 | 7b0c_C_DA17_DC18 | BBB | BB00 | 74 | 0.24 |
| 18 | 7b0c_C_DC18_DC19 | B12 | BB04 | 51 | 0.19 |
| 19 | 7b0c_C_DC19_DA20 | BBB | BB00 | 74 | 0.23 |
| 20 | 7b0c_C_DA20_DA21 | BBB | BB00 | 84 | 0.16 |
| 21 | 7b0c_C_DA21_DT22 | miB | BB13 | 83 | 0.18 |
| 22 | 7b0c_C_DT22_DT23 | NAN | NANT | 0 | 0.71 |
| 23 | 7b0c_D_DA1_DA2 | NAN | NANT | 0 | 0.75 |
| 24 | 7b0c_D_DA2_DT3 | A-B | AB01 | 50 | 0.26 |
| 25 | 7b0c_D_DT3_DT4 | BBB | BB00 | 65 | 0.28 |
| 26 | 7b0c_D_DT4_DG5 | B12 | BB04 | 46 | 0.37 |
| 27 | 7b0c_D_DG5_DG6 | BBB | BB00 | 63 | 0.33 |
| 28 | 7b0c_D_DG6_DT7 | BBB | BB00 | 75 | 0.31 |
| 29 | 7b0c_D_DT7_DA8 | miB | BB12 | 72 | 0.42 |
| 30 | 7b0c_D_DA8_DG9 | NAN | NANT | 0 | 0.57 |
| 31 | 7b0c_D_DG9_DA10 | BBB | BB00 | 16 | 0.37 |
| 32 | 7b0c_D_DA10_DT11 | BBB | BB00 | 57 | 0.25 |
| 33 | 7b0c_D_DT11_DG12 | B12 | BB04 | 36 | 0.38 |
| 34 | 7b0c_D_DG12_DA13 | BB2 | BB07 | 60 | 0.17 |
| 35 | 7b0c_D_DA13_DT14 | BBB | BB00 | 65 | 0.28 |
| 36 | 7b0c_D_DT14_DA15 | NAN | NANT | 0 | 0.38 |
| 37 | 7b0c_D_DA15_DT16 | B-A | BA05 | 78 | 0.30 |
| 38 | 7b0c_D_DT16_DT17 | BBB | BB01 | 50 | 0.25 |
| 39 | 7b0c_D_DT17_DC18 | BBB | BB00 | 63 | 0.21 |
| 40 | 7b0c_D_DC18_DG19 | miB | BB10 | 75 | 0.29 |
| 41 | 7b0c_D_DG19_DT20 | B12 | BB04 | 54 | 0.25 |
| 42 | 7b0c_D_DT20_DG21 | BBB | BB00 | 81 | 0.14 |
| 43 | 7b0c_D_DG21_DT22 | miB | BB13 | 85 | 0.15 |
| 44 | 7b0c_D_DT22_DT23 | BBw | BB16 | 36 | 0.45 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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| Color by conformation group (pyramids) | |
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| visible |
| Color by NtC (balls) |
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| B | ||||
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