Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
Structure of LuxR with DNA (activation)
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 40 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 7amt_E_DT1_DA2 | B12 | BB04 | 74 | 0.22 |
| 02 | 7amt_E_DA2_DT3 | BBw | BB02 | 85 | 0.15 |
| 03 | 7amt_E_DT3_DA4 | BBB | BB00 | 63 | 0.22 |
| 04 | 7amt_E_DA4_DT5 | BBB | BB00 | 52 | 0.24 |
| 05 | 7amt_E_DT5_DA6 | BBB | BB00 | 83 | 0.12 |
| 06 | 7amt_E_DA6_DC7 | BBB | BB00 | 89 | 0.17 |
| 07 | 7amt_E_DC7_DA8 | NAN | NANT | 0 | 0.37 |
| 08 | 7amt_E_DA8_DG9 | B12 | BB04 | 51 | 0.13 |
| 09 | 7amt_E_DG9_DT10 | BBB | BB01 | 76 | 0.14 |
| 10 | 7amt_E_DT10_DA11 | BBB | BB01 | 73 | 0.17 |
| 11 | 7amt_E_DA11_DA12 | BBB | BB01 | 14 | 0.27 |
| 12 | 7amt_E_DA12_DT13 | BBB | BB00 | 43 | 0.39 |
| 13 | 7amt_E_DT13_DG14 | NAN | NANT | 0 | 0.59 |
| 14 | 7amt_E_DG14_DT15 | NAN | NANT | 0 | 0.45 |
| 15 | 7amt_E_DT15_DC16 | BBB | BB00 | 73 | 0.14 |
| 16 | 7amt_E_DC16_DA17 | B12 | BB04 | 57 | 0.13 |
| 17 | 7amt_E_DA17_DT18 | BBB | BB01 | 53 | 0.21 |
| 18 | 7amt_E_DT18_DT19 | BBB | BB01 | 14 | 0.29 |
| 19 | 7amt_E_DT19_DA20 | BBB | BB00 | 49 | 0.26 |
| 20 | 7amt_E_DA20_DT21 | miB | BB15 | 68 | 0.26 |
| 21 | 7amt_F_DA1_DT2 | miB | BB15 | 57 | 0.37 |
| 22 | 7amt_F_DT2_DA3 | NAN | NANT | 0 | 0.42 |
| 23 | 7amt_F_DA3_DA4 | B-A | BA05 | 52 | 0.40 |
| 24 | 7amt_F_DA4_DT5 | B-A | BA05 | 51 | 0.39 |
| 25 | 7amt_F_DT5_DG6 | NAN | NANT | 0 | 0.44 |
| 26 | 7amt_F_DG6_DA7 | BBB | BB00 | 57 | 0.22 |
| 27 | 7amt_F_DA7_DC8 | miB | BB12 | 56 | 0.43 |
| 28 | 7amt_F_DC8_DA9 | BBw | BB16 | 50 | 0.39 |
| 29 | 7amt_F_DA9_DT10 | BBB | BB00 | 60 | 0.23 |
| 30 | 7amt_F_DT10_DT11 | NAN | NANT | 0 | 0.46 |
| 31 | 7amt_F_DT11_DA12 | NAN | NANT | 0 | 0.33 |
| 32 | 7amt_F_DA12_DC13 | A-B | AB03 | 28 | 0.36 |
| 33 | 7amt_F_DC13_DT14 | BBB | BB00 | 45 | 0.35 |
| 34 | 7amt_F_DT14_DG15 | B-A | BA09 | 63 | 0.32 |
| 35 | 7amt_F_DG15_DT16 | A-B | AB05 | 40 | 0.35 |
| 36 | 7amt_F_DT16_DA17 | B-A | BA13 | 50 | 0.41 |
| 37 | 7amt_F_DA17_DT18 | A-B | AB01 | 11 | 0.49 |
| 38 | 7amt_F_DT18_DA19 | BBB | BB00 | 77 | 0.21 |
| 39 | 7amt_F_DA19_DT20 | BBB | BB00 | 82 | 0.19 |
| 40 | 7amt_F_DT20_DA21 | NAN | NANT | 0 | 0.41 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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