Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
Structure of LuxR with DNA (repression)
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 40 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 7amn_E_DT1_DA2 | BB2 | BB07 | 70 | 0.21 |
| 02 | 7amn_E_DA2_DT3 | BBB | BB01 | 36 | 0.23 |
| 03 | 7amn_E_DT3_DT4 | BBB | BB01 | 21 | 0.24 |
| 04 | 7amn_E_DT4_DG5 | B12 | BB04 | 70 | 0.28 |
| 05 | 7amn_E_DG5_DA6 | BBB | BB00 | 94 | 0.08 |
| 06 | 7amn_E_DA6_DT7 | BBB | BB01 | 59 | 0.24 |
| 07 | 7amn_E_DT7_DA8 | BBB | BB01 | 48 | 0.17 |
| 08 | 7amn_E_DA8_DA9 | BB2 | BB07 | 53 | 0.28 |
| 09 | 7amn_E_DA9_DA10 | BBB | BB00 | 87 | 0.17 |
| 10 | 7amn_E_DA10_DA11 | BBB | BB00 | 71 | 0.23 |
| 11 | 7amn_E_DA11_DT12 | BBB | BB00 | 80 | 0.19 |
| 12 | 7amn_E_DT12_DT13 | BBB | BB00 | 87 | 0.24 |
| 13 | 7amn_E_DT13_DA14 | B-A | BA09 | 81 | 0.28 |
| 14 | 7amn_E_DA14_DT15 | A-B | AB05 | 35 | 0.37 |
| 15 | 7amn_E_DT15_DC16 | BBB | BB00 | 82 | 0.23 |
| 16 | 7amn_E_DC16_DA17 | BB2 | BB07 | 89 | 0.20 |
| 17 | 7amn_E_DA17_DA18 | BBB | BB00 | 90 | 0.18 |
| 18 | 7amn_E_DA18_DT19 | BBB | BB00 | 84 | 0.22 |
| 19 | 7amn_E_DT19_DA20 | BBB | BB00 | 77 | 0.29 |
| 20 | 7amn_E_DA20_DA21 | NAN | NANT | 0 | 0.43 |
| 21 | 7amn_F_DT1_DT2 | BBB | BB00 | 27 | 0.47 |
| 22 | 7amn_F_DT2_DA3 | BB2 | BB07 | 82 | 0.13 |
| 23 | 7amn_F_DA3_DT4 | B-A | BA05 | 92 | 0.21 |
| 24 | 7amn_F_DT4_DT5 | BBB | BB01 | 16 | 0.18 |
| 25 | 7amn_F_DT5_DG6 | B12 | BB04 | 59 | 0.31 |
| 26 | 7amn_F_DG6_DA7 | BBB | BB00 | 88 | 0.11 |
| 27 | 7amn_F_DA7_DT8 | BBB | BB01 | 50 | 0.25 |
| 28 | 7amn_F_DT8_DA9 | A-B | AB03 | 72 | 0.34 |
| 29 | 7amn_F_DA9_DA10 | BB2 | BB07 | 71 | 0.21 |
| 30 | 7amn_F_DA10_DT11 | BBB | BB01 | 87 | 0.17 |
| 31 | 7amn_F_DT11_DT12 | BBB | BB01 | 69 | 0.23 |
| 32 | 7amn_F_DT12_DT13 | BBB | BB00 | 76 | 0.21 |
| 33 | 7amn_F_DT13_DT14 | BBB | BB00 | 81 | 0.27 |
| 34 | 7amn_F_DT14_DA15 | B-A | BA09 | 81 | 0.28 |
| 35 | 7amn_F_DA15_DT16 | A-B | AB05 | 49 | 0.38 |
| 36 | 7amn_F_DT16_DC17 | BBB | BB00 | 62 | 0.22 |
| 37 | 7amn_F_DC17_DA18 | BB2 | BB07 | 87 | 0.17 |
| 38 | 7amn_F_DA18_DA19 | BBB | BB00 | 94 | 0.14 |
| 39 | 7amn_F_DA19_DT20 | BBB | BB00 | 94 | 0.17 |
| 40 | 7amn_F_DT20_DA21 | NAN | NANT | 0 | 0.34 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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