DNATCO v4.1: results

NMR structure of a DNA G-quadruplex containing two SP1 binding sites from HIV-1 promoter

Results of the assignment of 210 detected steps in 10 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.

Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.

step number	Step name	CANA	NtC	confal	rmsd	NtCs
001	7alu-m10_A_DA1_DG2	NAN	NANT	0	1.11	OP22
002	7alu-m1_A_DA1_DG2	NAN	NANT	0	0.70	ZZ2S
003	7alu-m2_A_DA1_DG2	NAN	NANT	0	0.47	ZZ2S
004	7alu-m3_A_DA1_DG2	NAN	NANT	0	0.43	ZZ2S
005	7alu-m4_A_DA1_DG2	NAN	NANT	0	0.46	ZZ2S
006	7alu-m5_A_DA1_DG2	NAN	NANT	0	0.48	ZZ2S
007	7alu-m6_A_DA1_DG2	NAN	NANT	0	0.59	ZZ2S
008	7alu-m7_A_DA1_DG2	NAN	NANT	0	0.45	ZZ2S
009	7alu-m8_A_DA1_DG2	NAN	NANT	0	0.50	ZZ2S
010	7alu-m9_A_DA1_DG2	NAN	NANT	0	0.43	ZZ2S
011	7alu-m10_A_DG2_DG3	NAN	NANT	0	1.16	OP24
012	7alu-m1_A_DG2_DG3	NAN	NANT	0	1.15	OP24
013	7alu-m2_A_DG2_DG3	NAN	NANT	0	0.61	AB02
014	7alu-m3_A_DG2_DG3	NAN	NANT	0	1.39	OP24
015	7alu-m4_A_DG2_DG3	NAN	NANT	0	0.61	AB02
016	7alu-m5_A_DG2_DG3	NAN	NANT	0	0.59	AB02
017	7alu-m6_A_DG2_DG3	NAN	NANT	0	0.72	AB02
018	7alu-m7_A_DG2_DG3	NAN	NANT	0	1.32	OP24
019	7alu-m8_A_DG2_DG3	NAN	NANT	0	1.30	OP24
020	7alu-m9_A_DG2_DG3	NAN	NANT	0	1.41	OP24
021	7alu-m10_A_DG3_DG4	A-B	AB01	28	0.37	AB01
022	7alu-m1_A_DG3_DG4	NAN	NANT	0	0.47	AA04
023	7alu-m2_A_DG3_DG4	A-B	AB02	39	0.49	AB02
024	7alu-m3_A_DG3_DG4	AAA	AA02	16	0.44	AA02
025	7alu-m4_A_DG3_DG4	A-B	AB02	26	0.60	AB02
026	7alu-m5_A_DG3_DG4	A-B	AB02	30	0.54	AB02
027	7alu-m6_A_DG3_DG4	A-B	AB02	42	0.46	AB02
028	7alu-m7_A_DG3_DG4	A-B	AB02	30	0.61	AB02
029	7alu-m8_A_DG3_DG4	AAA	AA04	23	0.52	AA04
030	7alu-m9_A_DG3_DG4	A-B	AB01	22	0.45	AB01
031	7alu-m10_A_DG4_DA5	NAN	NANT	0	1.25	BB15
032	7alu-m1_A_DG4_DA5	NAN	NANT	0	1.11	IC02
033	7alu-m2_A_DG4_DA5	NAN	NANT	0	1.60	AB02
034	7alu-m3_A_DG4_DA5	NAN	NANT	0	0.88	AB04
035	7alu-m4_A_DG4_DA5	NAN	NANT	0	1.41	AB02
036	7alu-m5_A_DG4_DA5	NAN	NANT	0	1.52	AB02
037	7alu-m6_A_DG4_DA5	NAN	NANT	0	1.49	AB02
038	7alu-m7_A_DG4_DA5	NAN	NANT	0	1.44	AB02
039	7alu-m8_A_DG4_DA5	NAN	NANT	0	1.45	IC04
040	7alu-m9_A_DG4_DA5	NAN	NANT	0	1.28	BB15
041	7alu-m10_A_DA5_DG6	NAN	NANT	0	0.82	BB07
042	7alu-m1_A_DA5_DG6	NAN	NANT	0	0.88	BB07
043	7alu-m2_A_DA5_DG6	NAN	NANT	0	1.11	BB07
044	7alu-m3_A_DA5_DG6	NAN	NANT	0	0.86	BB07
045	7alu-m4_A_DA5_DG6	NAN	NANT	0	1.02	BB07
046	7alu-m5_A_DA5_DG6	NAN	NANT	0	0.98	BB07
047	7alu-m6_A_DA5_DG6	NAN	NANT	0	0.97	BB07
048	7alu-m7_A_DA5_DG6	NAN	NANT	0	0.88	BB07
049	7alu-m8_A_DA5_DG6	NAN	NANT	0	0.99	BB07
050	7alu-m9_A_DA5_DG6	NAN	NANT	0	0.84	BB07
051	7alu-m10_A_DG6_DG7	OPN	OP18	63	0.61	OP18
052	7alu-m1_A_DG6_DG7	NAN	NANT	0	0.69	OP18
053	7alu-m2_A_DG6_DG7	NAN	NANT	0	1.13	OP18
054	7alu-m3_A_DG6_DG7	NAN	NANT	0	0.65	OP18
055	7alu-m4_A_DG6_DG7	NAN	NANT	0	1.08	OP18
056	7alu-m5_A_DG6_DG7	NAN	NANT	0	0.90	OP18
057	7alu-m6_A_DG6_DG7	NAN	NANT	0	1.01	OP18
058	7alu-m7_A_DG6_DG7	NAN	NANT	0	0.98	OP18
059	7alu-m8_A_DG6_DG7	OPN	OP18	64	0.61	OP18
060	7alu-m9_A_DG6_DG7	OPN	OP18	30	0.69	OP18
061	7alu-m10_A_DG7_DT8	NAN	NANT	0	1.08	OP17
062	7alu-m1_A_DG7_DT8	NAN	NANT	0	1.74	OP23
063	7alu-m2_A_DG7_DT8	NAN	NANT	0	1.26	IC03
064	7alu-m3_A_DG7_DT8	NAN	NANT	0	1.06	OP17
065	7alu-m4_A_DG7_DT8	NAN	NANT	0	1.29	IC03
066	7alu-m5_A_DG7_DT8	NAN	NANT	0	1.32	IC03
067	7alu-m6_A_DG7_DT8	NAN	NANT	0	1.37	IC03
068	7alu-m7_A_DG7_DT8	NAN	NANT	0	1.50	IC03
069	7alu-m8_A_DG7_DT8	NAN	NANT	0	1.58	OP23
070	7alu-m9_A_DG7_DT8	NAN	NANT	0	1.13	OP20
071	7alu-m10_A_DT8_DG9	NAN	NANT	0	0.84	BB1S
072	7alu-m1_A_DT8_DG9	NAN	NANT	0	0.80	BB2S
073	7alu-m2_A_DT8_DG9	NAN	NANT	0	1.48	ZZ2S
074	7alu-m3_A_DT8_DG9	NAN	NANT	0	0.99	BB2S
075	7alu-m4_A_DT8_DG9	NAN	NANT	0	1.14	BB2S
076	7alu-m5_A_DT8_DG9	NAN	NANT	0	1.47	ZZ2S
077	7alu-m6_A_DT8_DG9	NAN	NANT	0	1.63	ZZ2S
078	7alu-m7_A_DT8_DG9	NAN	NANT	0	1.21	BB2S
079	7alu-m8_A_DT8_DG9	NAN	NANT	0	0.53	BB2S
080	7alu-m9_A_DT8_DG9	NAN	NANT	0	0.67	BB2S
081	7alu-m10_A_DG9_DT10	NAN	NANT	0	2.03	IC07
082	7alu-m1_A_DG9_DT10	NAN	NANT	0	1.99	IC07
083	7alu-m2_A_DG9_DT10	NAN	NANT	0	1.95	IC07
084	7alu-m3_A_DG9_DT10	NAN	NANT	0	2.06	IC07
085	7alu-m4_A_DG9_DT10	NAN	NANT	0	2.04	IC07
086	7alu-m5_A_DG9_DT10	NAN	NANT	0	1.98	IC07
087	7alu-m6_A_DG9_DT10	NAN	NANT	0	2.00	IC07
088	7alu-m7_A_DG9_DT10	NAN	NANT	0	2.02	IC07
089	7alu-m8_A_DG9_DT10	NAN	NANT	0	1.90	IC07
090	7alu-m9_A_DG9_DT10	NAN	NANT	0	2.07	IC07
091	7alu-m10_A_DT10_DG11	NAN	NANT	0	1.17	OP20
092	7alu-m1_A_DT10_DG11	NAN	NANT	0	1.05	OP20
093	7alu-m2_A_DT10_DG11	NAN	NANT	0	1.00	OP20
094	7alu-m3_A_DT10_DG11	NAN	NANT	0	1.15	OP20
095	7alu-m4_A_DT10_DG11	NAN	NANT	0	1.14	OP20
096	7alu-m5_A_DT10_DG11	NAN	NANT	0	1.09	OP20
097	7alu-m6_A_DT10_DG11	NAN	NANT	0	1.09	OP20
098	7alu-m7_A_DT10_DG11	NAN	NANT	0	1.16	OP20
099	7alu-m8_A_DT10_DG11	NAN	NANT	0	1.30	OP20
100	7alu-m9_A_DT10_DG11	NAN	NANT	0	1.32	OP20
101	7alu-m10_A_DG11_DG12	NAN	NANT	0	1.72	ZZ02
102	7alu-m1_A_DG11_DG12	NAN	NANT	0	0.81	AB02
103	7alu-m2_A_DG11_DG12	NAN	NANT	0	0.89	BB10
104	7alu-m3_A_DG11_DG12	NAN	NANT	0	0.73	AB02
105	7alu-m4_A_DG11_DG12	NAN	NANT	0	0.89	BB10
106	7alu-m5_A_DG11_DG12	NAN	NANT	0	0.94	BB10
107	7alu-m6_A_DG11_DG12	NAN	NANT	0	0.91	BB10
108	7alu-m7_A_DG11_DG12	NAN	NANT	0	0.81	BB10
109	7alu-m8_A_DG11_DG12	NAN	NANT	0	1.72	ZZ02
110	7alu-m9_A_DG11_DG12	NAN	NANT	0	0.80	AB02
111	7alu-m10_A_DG12_DC13	NAN	NANT	0	1.18	OP04
112	7alu-m1_A_DG12_DC13	NAN	NANT	0	1.28	AA02
113	7alu-m2_A_DG12_DC13	NAN	NANT	0	1.47	BB20
114	7alu-m3_A_DG12_DC13	NAN	NANT	0	1.36	BB00
115	7alu-m4_A_DG12_DC13	NAN	NANT	0	1.43	BB20
116	7alu-m5_A_DG12_DC13	NAN	NANT	0	1.39	BB20
117	7alu-m6_A_DG12_DC13	NAN	NANT	0	1.42	BB20
118	7alu-m7_A_DG12_DC13	NAN	NANT	0	1.34	AB02
119	7alu-m8_A_DG12_DC13	NAN	NANT	0	1.31	BB00
120	7alu-m9_A_DG12_DC13	NAN	NANT	0	1.29	BB17
121	7alu-m10_A_DC13_DC14	NAN	NANT	0	1.46	AB02
122	7alu-m1_A_DC13_DC14	NAN	NANT	0	1.42	AB02
123	7alu-m2_A_DC13_DC14	NAN	NANT	0	1.54	IC06
124	7alu-m3_A_DC13_DC14	NAN	NANT	0	1.46	IC06
125	7alu-m4_A_DC13_DC14	NAN	NANT	0	1.44	BB1S
126	7alu-m5_A_DC13_DC14	NAN	NANT	0	1.53	IC06
127	7alu-m6_A_DC13_DC14	NAN	NANT	0	1.58	IC06
128	7alu-m7_A_DC13_DC14	NAN	NANT	0	1.47	BB1S
129	7alu-m8_A_DC13_DC14	NAN	NANT	0	1.44	AB02
130	7alu-m9_A_DC13_DC14	NAN	NANT	0	1.43	AB02
131	7alu-m10_A_DC14_DT15	NAN	NANT	0	0.79	BB03
132	7alu-m1_A_DC14_DT15	NAN	NANT	0	0.87	BB03
133	7alu-m2_A_DC14_DT15	NAN	NANT	0	0.96	AB02
134	7alu-m3_A_DC14_DT15	NAN	NANT	0	0.67	BB03
135	7alu-m4_A_DC14_DT15	NAN	NANT	0	0.92	AB02
136	7alu-m5_A_DC14_DT15	NAN	NANT	0	1.42	OP24
137	7alu-m6_A_DC14_DT15	NAN	NANT	0	0.97	BB08
138	7alu-m7_A_DC14_DT15	NAN	NANT	0	0.96	BB08
139	7alu-m8_A_DC14_DT15	NAN	NANT	0	0.73	BB03
140	7alu-m9_A_DC14_DT15	NAN	NANT	0	0.67	BB03
141	7alu-m10_A_DT15_DG16	NAN	NANT	0	0.54	BB2S
142	7alu-m1_A_DT15_DG16	NAN	NANT	0	1.72	ZZ2S
143	7alu-m2_A_DT15_DG16	NAN	NANT	0	1.78	ZZ2S
144	7alu-m3_A_DT15_DG16	NAN	NANT	0	0.84	BB2S
145	7alu-m4_A_DT15_DG16	NAN	NANT	0	0.71	BB2S
146	7alu-m5_A_DT15_DG16	NAN	NANT	0	0.83	BB2S
147	7alu-m6_A_DT15_DG16	NAN	NANT	0	1.77	ZZ2S
148	7alu-m7_A_DT15_DG16	NAN	NANT	0	1.78	ZZ2S
149	7alu-m8_A_DT15_DG16	NAN	NANT	0	0.62	BB2S
150	7alu-m9_A_DT15_DG16	NAN	NANT	0	0.64	BB2S
151	7alu-m10_A_DG16_DG17	NAN	NANT	0	0.56	BBS1
152	7alu-m1_A_DG16_DG17	NAN	NANT	0	0.56	BBS1
153	7alu-m2_A_DG16_DG17	NAN	NANT	0	0.45	BBS1
154	7alu-m3_A_DG16_DG17	SYN	BBS1	78	0.35	BBS1
155	7alu-m4_A_DG16_DG17	NAN	NANT	0	0.53	BBS1
156	7alu-m5_A_DG16_DG17	NAN	NANT	0	0.56	BBS1
157	7alu-m6_A_DG16_DG17	NAN	NANT	0	0.43	BBS1
158	7alu-m7_A_DG16_DG17	NAN	NANT	0	0.45	BBS1
159	7alu-m8_A_DG16_DG17	NAN	NANT	0	0.51	BBS1
160	7alu-m9_A_DG16_DG17	NAN	NANT	0	0.57	BBS1
161	7alu-m10_A_DG17_DG18	NAN	NANT	0	0.49	BA17
162	7alu-m1_A_DG17_DG18	NAN	NANT	0	0.36	BA17
163	7alu-m2_A_DG17_DG18	NAN	NANT	0	0.47	BA17
164	7alu-m3_A_DG17_DG18	NAN	NANT	0	0.51	BA17
165	7alu-m4_A_DG17_DG18	NAN	NANT	0	0.66	BB10
166	7alu-m5_A_DG17_DG18	NAN	NANT	0	0.42	BA17
167	7alu-m6_A_DG17_DG18	NAN	NANT	0	0.51	BA17
168	7alu-m7_A_DG17_DG18	NAN	NANT	0	0.48	BA17
169	7alu-m8_A_DG17_DG18	NAN	NANT	0	0.51	BA17
170	7alu-m9_A_DG17_DG18	NAN	NANT	0	0.47	BA17
171	7alu-m10_A_DG18_DC19	NAN	NANT	0	2.86	IC04
172	7alu-m1_A_DG18_DC19	NAN	NANT	0	2.99	IC04
173	7alu-m2_A_DG18_DC19	NAN	NANT	0	2.96	IC04
174	7alu-m3_A_DG18_DC19	NAN	NANT	0	2.84	IC04
175	7alu-m4_A_DG18_DC19	NAN	NANT	0	2.91	IC04
176	7alu-m5_A_DG18_DC19	NAN	NANT	0	2.96	IC04
177	7alu-m6_A_DG18_DC19	NAN	NANT	0	2.93	IC04
178	7alu-m7_A_DG18_DC19	NAN	NANT	0	2.87	IC04
179	7alu-m8_A_DG18_DC19	NAN	NANT	0	2.85	IC04
180	7alu-m9_A_DG18_DC19	NAN	NANT	0	2.91	IC04
181	7alu-m10_A_DC19_DG20	NAN	NANT	0	1.63	OP12
182	7alu-m1_A_DC19_DG20	NAN	NANT	0	2.04	OP14
183	7alu-m2_A_DC19_DG20	NAN	NANT	0	1.72	OP12
184	7alu-m3_A_DC19_DG20	NAN	NANT	0	1.56	OP12
185	7alu-m4_A_DC19_DG20	NAN	NANT	0	1.72	OP12
186	7alu-m5_A_DC19_DG20	NAN	NANT	0	1.73	OP12
187	7alu-m6_A_DC19_DG20	NAN	NANT	0	2.09	OP14
188	7alu-m7_A_DC19_DG20	NAN	NANT	0	1.68	OP12
189	7alu-m8_A_DC19_DG20	NAN	NANT	0	1.73	OP12
190	7alu-m9_A_DC19_DG20	NAN	NANT	0	1.68	OP12
191	7alu-m10_A_DG20_DG21	NAN	NANT	0	0.77	AA11
192	7alu-m1_A_DG20_DG21	NAN	NANT	0	0.61	BB08
193	7alu-m2_A_DG20_DG21	NAN	NANT	0	0.76	BB08
194	7alu-m3_A_DG20_DG21	NAN	NANT	0	0.56	BB08
195	7alu-m4_A_DG20_DG21	NAN	NANT	0	0.57	BB08
196	7alu-m5_A_DG20_DG21	NAN	NANT	0	0.57	BB08
197	7alu-m6_A_DG20_DG21	NAN	NANT	0	0.65	BB08
198	7alu-m7_A_DG20_DG21	NAN	NANT	0	0.63	BB08
199	7alu-m8_A_DG20_DG21	NAN	NANT	0	0.72	BB08
200	7alu-m9_A_DG20_DG21	NAN	NANT	0	0.53	BB08
201	7alu-m10_A_DG21_DG22	BBw	BB16	52	0.61	BB16
202	7alu-m1_A_DG21_DG22	BBB	BB00	58	0.41	BB00
203	7alu-m2_A_DG21_DG22	BBB	BB00	59	0.39	BB00
204	7alu-m3_A_DG21_DG22	BBB	BB00	50	0.40	BB00
205	7alu-m4_A_DG21_DG22	BBB	BB00	52	0.39	BB00
206	7alu-m5_A_DG21_DG22	BBB	BB00	41	0.44	BB00
207	7alu-m6_A_DG21_DG22	BBB	BB00	51	0.42	BB00
208	7alu-m7_A_DG21_DG22	BBB	BB00	25	0.50	BB00
209	7alu-m8_A_DG21_DG22	BBB	BB00	60	0.38	BB00
210	7alu-m9_A_DG21_DG22	BBB	BB00	54	0.40	BB00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

step:
Table of conformers

	δ1	ε1	ζ1	α2	β2	γ2	δ2	χ1	χ2	μ	NN	CC
step_torsions
ntC_average
Δ torsions
torsion scores

comments	step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA

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Results of the assignment of 210 detected steps in 10 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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