Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
Structure of yeast Rmd9p in complex with 20nt target RNA
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 15 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 7a9w_B_A1_U2 | NAN | NANT | 0 | 0.54 |
| 02 | 7a9w_B_U2_A3 | NAN | NANT | 0 | 1.32 |
| 03 | 7a9w_B_A3_A4 | NAN | NANT | 0 | 1.30 |
| 04 | 7a9w_B_A4_A5 | AAA | AA00 | 33 | 0.46 |
| 05 | 7a9w_B_A5_A6 | OPN | OP01 | 56 | 0.61 |
| 06 | 7a9w_B_A6_U7 | AAA | AA00 | 75 | 0.26 |
| 07 | 7a9w_B_U7_A8 | A-B | AB04 | 86 | 0.12 |
| 08 | 7a9w_B_A8_A9 | NAN | NANT | 0 | 1.06 |
| 09 | 7a9w_B_A9_C10 | NAN | NANT | 0 | 0.47 |
| 10 | 7a9w_B_C10_A11 | NAN | NANT | 0 | 1.41 |
| 11 | 7a9w_B_A11_U12 | AAA | AA00 | 27 | 0.46 |
| 12 | 7a9w_B_U12_U13 | AAA | AA08 | 14 | 0.55 |
| 13 | 7a9w_B_U13_C14 | A-B | AB04 | 49 | 0.37 |
| 14 | 7a9w_B_C14_U15 | OPN | OP13 | 86 | 0.33 |
| 15 | 7a9w_B_U15_U16 | A-B | AB05 | 80 | 0.40 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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| Color by conformation group (pyramids) | |
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| Color by NtC (balls) |
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| A-B | ||||
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| B-A | ||||
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| B | ||||
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